Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QLH56_RS07905 Genome accession   NZ_CP125107
Coordinates   1642868..1643554 (+) Length   228 a.a.
NCBI ID   WP_003101668.1    Uniprot ID   -
Organism   Streptococcus iniae strain DFSM220524     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637868..1648554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS07880 (QLH56_07880) ktrB 1638112..1639473 (-) 1362 WP_017794720.1 potassium uptake transporter channel subunit KtrB -
  QLH56_RS07885 (QLH56_07885) rsmG 1639565..1640281 (-) 717 WP_003101672.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QLH56_RS07890 (QLH56_07890) - 1640426..1640983 (+) 558 WP_003101671.1 LemA family protein -
  QLH56_RS07895 (QLH56_07895) htpX 1641022..1641918 (+) 897 WP_003101670.1 zinc metalloprotease HtpX -
  QLH56_RS07900 (QLH56_07900) - 1642106..1642639 (+) 534 WP_003101669.1 DUF177 domain-containing protein -
  QLH56_RS07905 (QLH56_07905) covR 1642868..1643554 (+) 687 WP_003101668.1 two-component system response regulator CovR Regulator
  QLH56_RS07910 (QLH56_07910) - 1643557..1645044 (+) 1488 WP_037584827.1 HAMP domain-containing histidine kinase -
  QLH56_RS07915 (QLH56_07915) nrdR 1645190..1645684 (+) 495 WP_003101666.1 transcriptional regulator NrdR -
  QLH56_RS07920 (QLH56_07920) - 1645668..1646855 (+) 1188 WP_003101665.1 DnaD domain protein -
  QLH56_RS07925 (QLH56_07925) dnaI 1646856..1647758 (+) 903 WP_003101664.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26670.62 Da        Isoelectric Point: 4.6541

>NTDB_id=829979 QLH56_RS07905 WP_003101668.1 1642868..1643554(+) (covR) [Streptococcus iniae strain DFSM220524]
MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLDTALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETEKKSPNQGIYRDLVLNPQNRSVNRGDEEISLTKREY
DLLNILMSNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDMQGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=829979 QLH56_RS07905 WP_003101668.1 1642868..1643554(+) (covR) [Streptococcus iniae strain DFSM220524]
ATGACAAAAAAAATTCTAATTGTTGAAGATGAAAAAAATCTTGCAAGGTTTGTTTCATTAGAATTGCAACACGAAGGTTA
CGAAGTAACTGTAGAAGTGAATGGTCGTGAAGGACTTGACACAGCGCTTGAAAAAGATTTTGATTTAATCTTGCTTGATT
TGATGTTACCTGAAATGGATGGTTTTGAAGTGACCCGTCGTCTTCAAACTGAAAAAACAACCTACATTATGATGATGACA
GCACGCGATTCTATCATGGACGTGGTTGCTGGTTTGGATCGTGGTGCAGATGATTATATTGTTAAGCCATTTGCTATTGA
AGAATTATTGGCACGTATTCGTGCAATTTTCCGTCGTCAAGATATTGAAACTGAGAAAAAATCTCCTAATCAAGGTATTT
ACCGTGATTTAGTCTTAAATCCACAAAACCGTTCTGTAAACCGTGGAGATGAAGAAATTTCATTGACAAAACGCGAATAT
GATTTGTTAAACATTTTAATGAGCAATATGAATCGTGTCATGACGCGTGAAGAGTTGCTGTCAAATGTTTGGAAATACGA
TGAAGCTGTTGAAACAAACGTTGTTGACGTGTATATTCGTTACCTACGTGGAAAAATCGATATGCAAGGACGTGAGTCCT
ATATTCAAACTGTTCGTGGAATGGGATATGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.533

100

0.829
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.52

99.561

0.662
  vicR Streptococcus mutans UA159

43.29

100

0.439
  micA Streptococcus pneumoniae Cp1015

43.043

100

0.434