Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMA14_RS00275 Genome accession   NZ_CP125087
Coordinates   59330..60007 (+) Length   225 a.a.
NCBI ID   WP_049367123.1    Uniprot ID   A0AAQ3FIP0
Organism   Haemophilus parainfluenzae strain EL1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54330..65007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS00250 (QMA14_00250) rppH 54488..55081 (-) 594 WP_049376123.1 RNA pyrophosphohydrolase -
  QMA14_RS00255 (QMA14_00255) ampD 55566..56129 (-) 564 WP_005695512.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QMA14_RS00260 (QMA14_00260) pilA 56272..56715 (+) 444 WP_005697917.1 prepilin peptidase-dependent pilin Machinery gene
  QMA14_RS00265 (QMA14_00265) pilB 56722..58101 (+) 1380 WP_284173946.1 GspE/PulE family protein Machinery gene
  QMA14_RS00270 (QMA14_00270) pilC 58110..59333 (+) 1224 WP_049376124.1 type II secretion system F family protein Machinery gene
  QMA14_RS00275 (QMA14_00275) pilD 59330..60007 (+) 678 WP_049367123.1 A24 family peptidase Machinery gene
  QMA14_RS00280 (QMA14_00280) coaE 60094..60717 (+) 624 WP_005695506.1 dephospho-CoA kinase -
  QMA14_RS00285 (QMA14_00285) yacG 60707..60913 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  QMA14_RS00290 (QMA14_00290) - 60910..61191 (+) 282 WP_032822874.1 GNAT family N-acetyltransferase -
  QMA14_RS00295 (QMA14_00295) rhlB 61281..62540 (+) 1260 WP_115912279.1 ATP-dependent RNA helicase RhlB -
  QMA14_RS00300 (QMA14_00300) mreD 62581..63069 (-) 489 WP_005695501.1 rod shape-determining protein MreD -
  QMA14_RS00305 (QMA14_00305) mreC 63069..64133 (-) 1065 WP_005695499.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26278.13 Da        Isoelectric Point: 6.3162

>NTDB_id=829882 QMA14_RS00275 WP_049367123.1 59330..60007(+) (pilD) [Haemophilus parainfluenzae strain EL1]
MMTFAFFLLGGLAGIFAWFYIDRFIPNLQQEIYQNYVELYPENRPIFHSEKALIQSQKCGHIFRYFLGFGLCFAVLDYFL
QDELFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQEFSILTLSQSLESAVSFFSVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIEYLPLFLFIACLLGIIVYWISRKPVLPFAPFLCISLIVTSAITL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=829882 QMA14_RS00275 WP_049367123.1 59330..60007(+) (pilD) [Haemophilus parainfluenzae strain EL1]
ATGATGACATTCGCCTTTTTCTTATTGGGTGGTTTAGCGGGCATCTTTGCTTGGTTTTATATTGATCGTTTTATTCCTAA
CCTTCAACAAGAAATTTATCAGAACTATGTCGAACTTTATCCCGAAAACAGGCCTATTTTCCATAGCGAAAAAGCATTGA
TTCAATCTCAAAAGTGTGGTCATATTTTTCGTTATTTTTTAGGATTCGGACTCTGTTTTGCTGTACTCGATTATTTTCTT
CAGGATGAATTGTTTACTTTATGGCTCGCGATTACGCTTAGTCTCATCTTTGTTATCAGTTGGCTAGACTGGCATTATCA
ACTGATTTCACCAACACCTTGCCTATTTTTATTTTTCCTGGGGCTATTCGGCGCACATCAAGAATTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCAGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGTCGTGGCGATTATTGGCTCGCTTTGGGAATCGGCACTTATCTCACCATCGAATACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATAATAGTCTATTGGATTTCTCGTAAACCTGTTTTACCTTTTGCGCCCTTTCTTT
GCATATCGTTAATCGTCACCAGTGCAATAACCTTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

54.299

98.222

0.533
  pilD Haemophilus influenzae 86-028NP

53.394

98.222

0.524