Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6L90_RS05625 Genome accession   NZ_CP124967
Coordinates   1136934..1137476 (-) Length   180 a.a.
NCBI ID   WP_035212518.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain O54/95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1131934..1142476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L90_RS05610 (G6L90_05610) - 1134678..1135307 (+) 630 WP_003502754.1 MarC family protein -
  G6L90_RS05615 (G6L90_05615) - 1135434..1136582 (+) 1149 WP_129565184.1 HPP family protein -
  G6L90_RS05620 (G6L90_05620) - 1136637..1136900 (-) 264 WP_223564850.1 hypothetical protein -
  G6L90_RS05625 (G6L90_05625) ssb 1136934..1137476 (-) 543 WP_035212518.1 single-stranded DNA-binding protein Machinery gene
  G6L90_RS05630 (G6L90_05630) uvrA 1137783..1140704 (+) 2922 WP_099085416.1 excinuclease ABC subunit UvrA -
  G6L90_RS05635 (G6L90_05635) - 1140761..1141561 (+) 801 WP_060724997.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19163.87 Da        Isoelectric Point: 5.3175

>NTDB_id=829828 G6L90_RS05625 WP_035212518.1 1136934..1137476(-) (ssb) [Agrobacterium tumefaciens strain O54/95]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYGGGYDQQSSSRGGSA
RGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=829828 G6L90_RS05625 WP_035212518.1 1136934..1137476(-) (ssb) [Agrobacterium tumefaciens strain O54/95]
ATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAACGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCG
CCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCTGGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAAT
GGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAGGTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGACCGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTT
CAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGGGCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCG
GCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGCGGCGGTTACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTGCC
CGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.494
  ssb Vibrio cholerae strain A1552

49.153

98.333

0.483
  ssb Neisseria gonorrhoeae MS11

39.665

99.444

0.394
  ssb Neisseria meningitidis MC58

39.665

99.444

0.394