Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7679_RS09260 Genome accession   NZ_AP023392
Coordinates   1880967..1881461 (-) Length   164 a.a.
NCBI ID   WP_014638587.1    Uniprot ID   G7SHQ7
Organism   Streptococcus suis strain DAT300     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1875967..1886461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS09245 (DAT300_17990) - 1878639..1879583 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  H7679_RS09250 (DAT300_18000) - 1879599..1880255 (+) 657 WP_044686650.1 DUF1129 domain-containing protein -
  H7679_RS09255 (DAT300_18010) rpsR 1880695..1880934 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  H7679_RS09260 (DAT300_18020) ssbA 1880967..1881461 (-) 495 WP_014638587.1 single-stranded DNA-binding protein Machinery gene
  H7679_RS09265 (DAT300_18030) rpsF 1881473..1881763 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  H7679_RS09270 (DAT300_18040) - 1881935..1882924 (-) 990 WP_014638588.1 lipoate--protein ligase -
  H7679_RS09275 (DAT300_18050) - 1883008..1884447 (-) 1440 WP_024395393.1 6-phospho-beta-glucosidase -
  H7679_RS09280 (DAT300_18060) - 1884468..1885064 (-) 597 WP_029750194.1 histidine phosphatase family protein -
  H7679_RS09285 (DAT300_18070) - 1885076..1885672 (-) 597 WP_024395392.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18026.77 Da        Isoelectric Point: 4.7294

>NTDB_id=82963 H7679_RS09260 WP_014638587.1 1880967..1881461(-) (ssbA) [Streptococcus suis strain DAT300]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDSNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=82963 H7679_RS09260 WP_014638587.1 1880967..1881461(-) (ssbA) [Streptococcus suis strain DAT300]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTCCAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCGATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SHQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.604
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment