Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SKB18_RS05155 Genome accession   NZ_CP139163
Coordinates   1050055..1050645 (-) Length   196 a.a.
NCBI ID   WP_011921679.1    Uniprot ID   A0A0H3N1H3
Organism   Streptococcus suis strain cnzyss2-311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1045055..1055645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS05130 - 1045340..1045606 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SKB18_RS05135 spx 1045706..1046104 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  SKB18_RS05140 recA 1046340..1047491 (-) 1152 WP_011922545.1 recombinase RecA Machinery gene
  SKB18_RS05145 cinA 1047543..1048724 (-) 1182 WP_012774894.1 competence/damage-inducible protein A Machinery gene
  SKB18_RS05150 - 1048761..1049330 (-) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  SKB18_RS05155 ruvA 1050055..1050645 (-) 591 WP_011921679.1 Holliday junction branch migration protein RuvA Machinery gene
  SKB18_RS05160 hexB 1050684..1052621 (-) 1938 WP_012774891.1 DNA mismatch repair endonuclease MutL Machinery gene
  SKB18_RS05165 - 1052739..1054262 (-) 1524 WP_014636542.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=829467 SKB18_RS05155 WP_011921679.1 1050055..1050645(-) (ruvA) [Streptococcus suis strain cnzyss2-311]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=829467 SKB18_RS05155 WP_011921679.1 1050055..1050645(-) (ruvA) [Streptococcus suis strain cnzyss2-311]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N1H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408