Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIY76_RS21210 Genome accession   NZ_CP139130
Coordinates   4315944..4316480 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain YZ22PE165     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4310944..4321480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY76_RS21190 soxR 4312672..4313136 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  SIY76_RS21195 soxS 4313222..4313545 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SIY76_RS21200 pdeC 4313548..4315134 (-) 1587 Protein_4144 c-di-GMP phosphodiesterase PdeC -
  SIY76_RS21205 yjcB 4315564..4315845 (+) 282 WP_001295689.1 YjcB family protein -
  SIY76_RS21210 ssb 4315944..4316480 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SIY76_RS21215 uvrA 4316734..4319556 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SIY76_RS21220 yjbR 4319591..4319947 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SIY76_RS21225 yjbQ 4319951..4320367 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SIY76_RS21230 aphA 4320478..4321191 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=829396 SIY76_RS21210 WP_000168305.1 4315944..4316480(-) (ssb) [Escherichia coli strain YZ22PE165]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=829396 SIY76_RS21210 WP_000168305.1 4315944..4316480(-) (ssb) [Escherichia coli strain YZ22PE165]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489