Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIY77_RS12190 Genome accession   NZ_CP139125
Coordinates   2467932..2468468 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain YZ22PE244     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2462932..2473468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY77_RS12170 soxR 2464660..2465124 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  SIY77_RS12175 soxS 2465210..2465533 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SIY77_RS12180 pdeC 2465536..2467122 (-) 1587 Protein_2382 c-di-GMP phosphodiesterase PdeC -
  SIY77_RS12185 yjcB 2467552..2467833 (+) 282 WP_001295689.1 YjcB family protein -
  SIY77_RS12190 ssb 2467932..2468468 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SIY77_RS12195 uvrA 2468722..2471544 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SIY77_RS12200 yjbR 2471579..2471935 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SIY77_RS12205 yjbQ 2471939..2472355 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SIY77_RS12210 aphA 2472466..2473179 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=829286 SIY77_RS12190 WP_000168305.1 2467932..2468468(-) (ssb) [Escherichia coli strain YZ22PE244]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=829286 SIY77_RS12190 WP_000168305.1 2467932..2468468(-) (ssb) [Escherichia coli strain YZ22PE244]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489