Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   H7677_RS07605 Genome accession   NZ_AP023391
Coordinates   1558313..1558957 (+) Length   214 a.a.
NCBI ID   WP_184493306.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553313..1563957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS07580 (DAT299_14580) - 1553977..1555314 (-) 1338 WP_002942867.1 hemolysin family protein -
  H7677_RS07585 (DAT299_14590) - 1555447..1556226 (+) 780 WP_105201949.1 ABC transporter ATP-binding protein -
  H7677_RS07590 (DAT299_14600) - 1556241..1556795 (-) 555 WP_044759496.1 class I SAM-dependent methyltransferase -
  H7677_RS07595 (DAT299_14610) - 1556805..1557323 (-) 519 WP_044688554.1 TetR/AcrR family transcriptional regulator -
  H7677_RS07600 (DAT299_14620) - 1557445..1558263 (+) 819 WP_044759494.1 cation diffusion facilitator family transporter -
  H7677_RS07605 cclA/cilC 1558313..1558957 (+) 645 WP_184493306.1 prepilin peptidase Machinery gene
  H7677_RS07610 (DAT299_14630) - 1559065..1560525 (+) 1461 WP_184493307.1 nicotinate phosphoribosyltransferase -
  H7677_RS07615 (DAT299_14640) nadE 1560538..1561362 (+) 825 WP_184493309.1 ammonia-dependent NAD(+) synthetase -
  H7677_RS07620 (DAT299_14650) - 1562188..1562715 (-) 528 WP_002942846.1 VanZ family protein -
  H7677_RS07625 (DAT299_14660) rlmN 1562712..1563824 (-) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24203.32 Da        Isoelectric Point: 8.4760

>NTDB_id=82905 H7677_RS07605 WP_184493306.1 1558313..1558957(+) (cclA/cilC) [Streptococcus suis strain DAT299]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIASSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=82905 H7677_RS07605 WP_184493306.1 1558313..1558957(+) (cclA/cilC) [Streptococcus suis strain DAT299]
ATGAAGACAATTATCCTATTTTTCCTGGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCTCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCCATCCTGTCCC
AACTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCCTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCATTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.528

99.065

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae D39

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae R6

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae TIGR4

48.113

99.065

0.477
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453

Multiple sequence alignment