Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   R8611_RS02770 Genome accession   NZ_AP026927
Coordinates   546845..549067 (+) Length   740 a.a.
NCBI ID   WP_044811987.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541845..554067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS02745 (PC0174_05390) - 542198..543388 (-) 1191 WP_000843716.1 ferric reductase-like transmembrane domain-containing protein -
  R8611_RS02750 (PC0174_05400) - 543646..544305 (-) 660 WP_317648020.1 amino acid ABC transporter permease -
  R8611_RS02755 (PC0174_05410) - 544315..544992 (-) 678 WP_088847920.1 amino acid ABC transporter permease -
  R8611_RS02760 (PC0174_05420) - 545005..545799 (-) 795 WP_000726167.1 transporter substrate-binding domain-containing protein -
  R8611_RS02765 (PC0174_05430) - 545810..546568 (-) 759 WP_050228062.1 amino acid ABC transporter ATP-binding protein -
  R8611_RS02770 (PC0174_05440) recJ 546845..549067 (+) 2223 WP_044811987.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  R8611_RS02775 (PC0174_05450) - 549242..550903 (+) 1662 WP_000065637.1 ribonuclease J -
  R8611_RS02780 (PC0174_05460) - 550972..551751 (+) 780 WP_050102608.1 alpha/beta hydrolase family protein -
  R8611_RS02785 (PC0174_05470) murM 551863..553083 (+) 1221 WP_000286563.1 peptidoglycan bridge formation alanyltransferase MurM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82555.15 Da        Isoelectric Point: 4.3649

>NTDB_id=82905 R8611_RS02770 WP_044811987.1 546845..549067(+) (recJ) [Streptococcus pneumoniae strain PZ900700178]
MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHDAYLLHDMDKAVERIRQAIEE
GENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIGANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEAWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAVGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
IFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLSVNQWNGQTALQLMMMDARVE
GVQLFNIRGKNAVLPEGVPVLDFPGELPNLAASEAVVVKNIPEDITQLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTRDQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
QEMMALGTVQEIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=82905 R8611_RS02770 WP_044811987.1 546845..549067(+) (recJ) [Streptococcus pneumoniae strain PZ900700178]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCTGCAGGTAGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCTCGGTTATTGTTTGAGAGAGGGATTCAGGACCAAGAAAGTCTGAAGAAGTTTTTAGAACCTT
CCTTGGAGGACTTACATGATGCTTATCTGCTCCATGATATGGACAAGGCAGTGGAGCGGATTCGTCAGGCTATTGAAGAA
GGGGAAAATATTCTCGTTTATGGAGACTATGATGCGGATGGCATGACTTCGGCTTCTATTGTGAAGGAAAGTTTGGAACA
ACTTGGTGCTGAGTGCCGAGTTTACCTGCCAAATCGTTTTACCGATGGCTATGGCCCTAATGCTAGTGTTTATAAATACT
TTATCGAGCAAGAAGGGATTTCCTTGATTGTGACGGTGGACAATGGGGTTGCTGGTCATGAGGCTATTGCATTGGCTCAG
TCTATGGGAGTAGATGTCATTGTCACAGACCATCATTCCATGCCTGAAACCCTGCCAGATGCTTATGCTATTGTCCATCC
TGAACATCCAGATGCGGATTATCCTTTTAAATATTTGGCTGGTTGTGGAGTTGCTTTCAAGTTGGCTTGTGCCCTGTTAG
AAGAAGTGCAAGTGGAATTGCTTGATTTGGTCGCTATTGGAACTATTGCAGATATGGTGAGTCTGACGGATGAAAATCGT
ATCTTAGTTCAATATGGTCTGGAAATGTTGGGTCATACCCAGCGCATTGGTCTGCAAGAAATGCTGGACATGGCTGGGAT
TGGTGCCAACGAAGTGACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTGAATGCCTTGGGTCGCTTGGATGATC
CTAATCCTGCTATTGATTTGTTGACTGGATTTGACGACGAGGAAGCGCACGAGATTGCCCTCATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTGCAATCTATCTATGAAGAAGCCAAGACTATGGTGGATCCTGAGAAGAAGGTCCAAGTCTT
GGCTAAGGAAGCCTGGAATCCTGGGGTTCTAGGAATCGTGGCAGGGCGCTTGTTGGAAGAACTAGGGCAGACAGTCATTG
TGCTTAATATAGAAGACGGTCGTGCCAAGGGCAGTGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCCTTGGATCCT
CATCGAGACCTCTTCATAGCCTTTGGTGGCCATGCTGGTGCAGCTGGCATGACGCTGGAAGTTGAGAAACTTTCAGATTT
ATCTCAGGTCTTGGAAGATTATGTCCGTGAAAAAGGTGCAGATGCTGTTGGCAAGAACAAGTTAAATCTAGATGAAGAAC
TGGATTTGGAGGCACTTAGCTTGGAAACGGTCAAAAGTTTTGAACGTTTAGCTCCTTTTGGAATGGATAATCAGAAACCT
ATTTTTTATATCAAGAATTTTCAGGTCGAAAGTGCTCGTACTATGGGGGCAGGTAATGCCCATCTAAAGCTGAAAATTTC
CAAGGGTGAGGCGAGTTTTGAAGTGGTAGCCTTTGGTCAAGGCAGATGGGCGACAGAGTTTTCTCAAACCAAGAATCTAG
AGTTAGCGGTTAAATTGTCTGTCAACCAATGGAACGGCCAAACTGCCCTCCAGTTGATGATGATGGATGCGCGAGTGGAA
GGTGTTCAACTTTTTAACATTCGTGGAAAAAATGCAGTCTTGCCAGAAGGTGTTCCAGTCTTGGATTTTCCTGGAGAACT
GCCAAATCTTGCGGCTAGTGAAGCTGTTGTCGTAAAAAACATTCCAGAGGATATTACTCAGCTGAAGACCATTTTTCAGG
AACAGCATTTCTCTGCTGTCTATTTCAAAAATGATATTGACAAGGCCTATTATCTGACAGGTTATGGGACTAGAGATCAG
TTTGCCAAATTGTACAAGACTATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTGAAAGATTTGGCTGCATATCT
TAATATTCAACAAATCTTGCTGGTCAAGATGATTCAAGTATTTGAAGAACTAGGCTTTGTGACGATAAAAGATGGTGTGA
TGACAGTCAATAAAGAGGCGCCAAAGCGGGAGATAGGAGAAAGTCAAATTTACCAAAATCTCAAACAAACCGTTAAAGAC
CAAGAAATGATGGCGCTGGGTACGGTGCAAGAAATTTATGATTTTTTGATGGAAAAAGAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

99.324

100

0.993
  recJ Bacillus subtilis subsp. subtilis str. 168

36.876

100

0.389

Multiple sequence alignment