Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H7677_RS03685 Genome accession   NZ_AP023391
Coordinates   746287..747228 (+) Length   313 a.a.
NCBI ID   WP_024382906.1    Uniprot ID   A0AAJ2PG61
Organism   Streptococcus suis strain DAT299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 741287..752228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS03670 (DAT299_06760) - 742138..743175 (-) 1038 WP_024413706.1 3-deoxy-7-phosphoheptulonate synthase -
  H7677_RS03675 (DAT299_06770) - 743475..744068 (-) 594 WP_105153183.1 DUF1361 domain-containing protein -
  H7677_RS03680 (DAT299_06780) metG 744223..746226 (+) 2004 WP_184494164.1 methionine--tRNA ligase -
  H7677_RS03685 (DAT299_06790) coiA 746287..747228 (+) 942 WP_024382906.1 competence protein CoiA Machinery gene
  H7677_RS03690 (DAT299_06800) pepF 747458..749260 (+) 1803 WP_184494166.1 oligoendopeptidase F Regulator
  H7677_RS03695 (DAT299_06810) - 749262..749705 (+) 444 WP_044678419.1 hypothetical protein -
  H7677_RS03700 (DAT299_06820) - 749721..750269 (+) 549 WP_002938103.1 DUF6630 family protein -
  H7677_RS03705 (DAT299_06830) - 750344..751063 (+) 720 WP_184494168.1 O-methyltransferase -
  H7677_RS03710 (DAT299_06840) prsA 751124..752125 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36329.94 Da        Isoelectric Point: 7.8956

>NTDB_id=82894 H7677_RS03685 WP_024382906.1 746287..747228(+) (coiA) [Streptococcus suis strain DAT299]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNDRLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=82894 H7677_RS03685 WP_024382906.1 746287..747228(+) (coiA) [Streptococcus suis strain DAT299]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTCACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAATCTGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATCGTCTAGCTTTGGAAGTCCA
GTGTTCCAGTCTACCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428

Multiple sequence alignment