Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QJ053_RS01650 | Genome accession | NZ_CP124853 |
| Coordinates | 363885..364388 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain ED83 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 363885..385624 | 363885..364388 | within | 0 |
Gene organization within MGE regions
Location: 363885..385624
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJ053_RS01650 (QJ053_01650) | ssbA | 363885..364388 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| QJ053_RS01655 (QJ053_01655) | rpsR | 364440..364682 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| QJ053_RS01660 (QJ053_01660) | - | 364921..365820 (-) | 900 | WP_001797289.1 | Abi family protein | - |
| QJ053_RS01665 (QJ053_01665) | - | 365822..367036 (-) | 1215 | WP_410530463.1 | tyrosine-type recombinase/integrase | - |
| QJ053_RS01670 (QJ053_01670) | - | 367492..368187 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| QJ053_RS01675 (QJ053_01675) | - | 368331..368543 (+) | 213 | WP_000794656.1 | helix-turn-helix domain-containing protein | - |
| QJ053_RS01680 (QJ053_01680) | - | 368544..368816 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| QJ053_RS01685 (QJ053_01685) | - | 368828..368974 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| QJ053_RS01690 (QJ053_01690) | tscA | 368967..369176 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| QJ053_RS01695 (QJ053_01695) | tscT | 369179..369496 (+) | 318 | WP_001103938.1 | type II toxin-antitoxin system toxin TscT | - |
| QJ053_RS01700 (QJ053_01700) | - | 369548..371161 (+) | 1614 | WP_000344763.1 | hypothetical protein | - |
| QJ053_RS01705 (QJ053_01705) | - | 371332..372135 (+) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| QJ053_RS01710 (QJ053_01710) | - | 372122..372394 (+) | 273 | WP_001149387.1 | hypothetical protein | - |
| QJ053_RS01715 (QJ053_01715) | - | 372396..373037 (+) | 642 | WP_410530465.1 | pathogenicity island protein | - |
| QJ053_RS01720 (QJ053_01720) | - | 373385..373726 (+) | 342 | WP_001190608.1 | hypothetical protein | - |
| QJ053_RS01725 (QJ053_01725) | - | 373738..374316 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| QJ053_RS01730 (QJ053_01730) | - | 374334..374552 (+) | 219 | WP_000448772.1 | capsid morphogenesis B protein | - |
| QJ053_RS01735 (QJ053_01735) | - | 374603..375130 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| QJ053_RS01740 (QJ053_01740) | - | 375133..375474 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| QJ053_RS01745 (QJ053_01745) | - | 375471..376040 (+) | 570 | WP_001293074.1 | terminase small subunit | - |
| QJ053_RS01750 (QJ053_01750) | - | 376497..376988 (+) | 492 | WP_000770704.1 | hypothetical protein | - |
| QJ053_RS01755 (QJ053_01755) | - | 376975..377604 (+) | 630 | WP_000742266.1 | hypothetical protein | - |
| QJ053_RS01760 (QJ053_01760) | - | 377609..378550 (+) | 942 | WP_000323493.1 | hypothetical protein | - |
| QJ053_RS01765 (QJ053_01765) | - | 378746..378877 (+) | 132 | WP_000247644.1 | hypothetical protein | - |
| QJ053_RS01770 (QJ053_01770) | - | 379024..379122 (+) | 99 | Protein_351 | hypothetical protein | - |
| QJ053_RS01775 (QJ053_01775) | - | 379383..379535 (+) | 153 | WP_410530467.1 | hypothetical protein | - |
| QJ053_RS01780 (QJ053_01780) | - | 379606..379716 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| QJ053_RS01785 (QJ053_01785) | - | 379718..379903 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| QJ053_RS01790 (QJ053_01790) | - | 380688..381626 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| QJ053_RS01795 (QJ053_01795) | - | 381665..382365 (-) | 701 | Protein_356 | tyrosine-type recombinase/integrase | - |
| QJ053_RS01800 (QJ053_01800) | selX | 382571..383182 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| QJ053_RS01805 (QJ053_01805) | - | 383551..383919 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| QJ053_RS01810 (QJ053_01810) | - | 384100..384672 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| QJ053_RS01815 (QJ053_01815) | - | 384810..385073 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| QJ053_RS01820 (QJ053_01820) | - | 385373..385624 (+) | 252 | WP_201462044.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=828409 QJ053_RS01650 WP_000934799.1 363885..364388(+) (ssbA) [Staphylococcus aureus strain ED83]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=828409 QJ053_RS01650 WP_000934799.1 363885..364388(+) (ssbA) [Staphylococcus aureus strain ED83]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |