Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QJS65_RS12495 Genome accession   NZ_CP124831
Coordinates   2399045..2399338 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain Sample7_7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2394045..2404338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS12445 (QJS65_12445) sinR 2394209..2394544 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QJS65_RS12450 (QJS65_12450) - 2394612..2395412 (-) 801 WP_008342195.1 TasA family protein -
  QJS65_RS12455 (QJS65_12455) - 2395471..2396043 (-) 573 WP_017357979.1 signal peptidase I -
  QJS65_RS12460 (QJS65_12460) tapA 2396093..2396620 (-) 528 WP_045034369.1 amyloid fiber anchoring/assembly protein TapA -
  QJS65_RS12465 (QJS65_12465) - 2396891..2397199 (+) 309 WP_282747444.1 DUF3889 domain-containing protein -
  QJS65_RS12470 (QJS65_12470) - 2397234..2397428 (-) 195 WP_024718846.1 YqzE family protein -
  QJS65_RS12475 (QJS65_12475) comGG 2397489..2397872 (-) 384 WP_282745260.1 competence type IV pilus minor pilin ComGG -
  QJS65_RS12480 (QJS65_12480) comGF 2397869..2398396 (-) 528 WP_218646143.1 competence type IV pilus minor pilin ComGF -
  QJS65_RS12485 (QJS65_12485) comGE 2398308..2398622 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  QJS65_RS12490 (QJS65_12490) comGD 2398606..2399052 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  QJS65_RS12495 (QJS65_12495) comGC 2399045..2399338 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  QJS65_RS12500 (QJS65_12500) comGB 2399355..2400395 (-) 1041 WP_282745261.1 competence type IV pilus assembly protein ComGB -
  QJS65_RS12505 (QJS65_12505) comGA 2400376..2401446 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  QJS65_RS12510 (QJS65_12510) - 2401904..2402776 (-) 873 WP_041506953.1 STAS domain-containing protein -
  QJS65_RS12520 (QJS65_12520) - 2403000..2403380 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QJS65_RS12525 (QJS65_12525) - 2403593..2403835 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=828218 QJS65_RS12495 WP_008342186.1 2399045..2399338(-) (comGC) [Bacillus altitudinis strain Sample7_7]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=828218 QJS65_RS12495 WP_008342186.1 2399045..2399338(-) (comGC) [Bacillus altitudinis strain Sample7_7]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CGTATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392