Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QJS65_RS12445 Genome accession   NZ_CP124831
Coordinates   2394209..2394544 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Sample7_7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2389209..2399544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS12425 (QJS65_12425) gcvT 2389686..2390783 (-) 1098 WP_019743009.1 glycine cleavage system aminomethyltransferase GcvT -
  QJS65_RS12430 (QJS65_12430) - 2391344..2393014 (+) 1671 WP_008342199.1 SNF2-related protein -
  QJS65_RS12435 (QJS65_12435) - 2393029..2393826 (+) 798 WP_017367588.1 YqhG family protein -
  QJS65_RS12440 (QJS65_12440) - 2394011..2394175 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  QJS65_RS12445 (QJS65_12445) sinR 2394209..2394544 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QJS65_RS12450 (QJS65_12450) - 2394612..2395412 (-) 801 WP_008342195.1 TasA family protein -
  QJS65_RS12455 (QJS65_12455) - 2395471..2396043 (-) 573 WP_017357979.1 signal peptidase I -
  QJS65_RS12460 (QJS65_12460) tapA 2396093..2396620 (-) 528 WP_045034369.1 amyloid fiber anchoring/assembly protein TapA -
  QJS65_RS12465 (QJS65_12465) - 2396891..2397199 (+) 309 WP_282747444.1 DUF3889 domain-containing protein -
  QJS65_RS12470 (QJS65_12470) - 2397234..2397428 (-) 195 WP_024718846.1 YqzE family protein -
  QJS65_RS12475 (QJS65_12475) comGG 2397489..2397872 (-) 384 WP_282745260.1 competence type IV pilus minor pilin ComGG -
  QJS65_RS12480 (QJS65_12480) comGF 2397869..2398396 (-) 528 WP_218646143.1 competence type IV pilus minor pilin ComGF -
  QJS65_RS12485 (QJS65_12485) comGE 2398308..2398622 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  QJS65_RS12490 (QJS65_12490) comGD 2398606..2399052 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  QJS65_RS12495 (QJS65_12495) comGC 2399045..2399338 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=828217 QJS65_RS12445 WP_017357978.1 2394209..2394544(+) (sinR) [Bacillus altitudinis strain Sample7_7]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=828217 QJS65_RS12445 WP_017357978.1 2394209..2394544(+) (sinR) [Bacillus altitudinis strain Sample7_7]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928