Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QLG15_RS22340 Genome accession   NZ_CP124813
Coordinates   4599555..4600079 (-) Length   174 a.a.
NCBI ID   WP_282625639.1    Uniprot ID   -
Organism   Citrobacter freundii strain CF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4594555..4605079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLG15_RS22320 (QLG15_22325) soxR 4596196..4596654 (-) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -
  QLG15_RS22325 (QLG15_22330) soxS 4596741..4597064 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  QLG15_RS22330 (QLG15_22335) - 4597067..4598653 (-) 1587 WP_003841054.1 EAL domain-containing protein -
  QLG15_RS22335 (QLG15_22340) - 4599207..4599488 (+) 282 WP_003031727.1 YjcB family protein -
  QLG15_RS22340 (QLG15_22345) ssb 4599555..4600079 (-) 525 WP_282625639.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QLG15_RS22345 (QLG15_22350) uvrA 4600331..4603153 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  QLG15_RS22350 (QLG15_22355) - 4603269..4603625 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  QLG15_RS22355 (QLG15_22360) aphA 4603753..4604466 (-) 714 WP_044702294.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18606.69 Da        Isoelectric Point: 5.2456

>NTDB_id=828106 QLG15_RS22340 WP_282625639.1 4599555..4600079(-) (ssb) [Citrobacter freundii strain CF12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSLVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=828106 QLG15_RS22340 WP_282625639.1 4599555..4600079(-) (ssb) [Citrobacter freundii strain CF12]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCTGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.77
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

49.162

100

0.506
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.506