Detailed information NTG0827890

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QK281_RS02390
• Genome accession: NZ_CP124746
• Coordinates: 496926..497798 (-)
• Length: 290 a.a.
• NCBI ID: WP_282467144.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain NN-MR659
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 491926..502798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QK281_RS02365 (QK281_02365)	-	493661..494845 (+)	1185	WP_282467142.1	tetratricopeptide repeat protein	-
QK281_RS02370 (QK281_02370)	mutT	494854..495267 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
QK281_RS02375 (QK281_02375)	yacG	495328..495522 (-)	195	WP_024945432.1	DNA gyrase inhibitor YacG	-
QK281_RS02380 (QK281_02380)	zapD	495532..496254 (-)	723	WP_282467143.1	cell division protein ZapD	-
QK281_RS02385 (QK281_02385)	coaE	496292..496906 (-)	615	WP_043126913.1	dephospho-CoA kinase	-
QK281_RS02390 (QK281_02390)	pilD	496926..497798 (-)	873	WP_282467144.1	A24 family peptidase	Machinery gene
QK281_RS02395 (QK281_02395)	pilC	497821..499062 (-)	1242	WP_043126919.1	type II secretion system F family protein	Machinery gene
QK281_RS02400 (QK281_02400)	pilB	499178..500884 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
QK281_RS02405 (QK281_02405)	tapA	500888..501316 (-)	429	WP_044800922.1	type IVa pilus major pilin TapA	-
QK281_RS02410 (QK281_02410)	nadC	501639..502496 (-)	858	WP_282467145.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32482.81 Da
• Isoelectric Point: 6.7410

>NTDB_id=827890 QK281_RS02390 WP_282467144.1 496926..497798(-) (pilD) [Aeromonas hydrophila strain NN-MR659]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPEAQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIMLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=827890 QK281_RS02390 WP_282467144.1 496926..497798(-) (pilD) [Aeromonas hydrophila strain NN-MR659]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTCATTCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAGGCACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCACTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATATC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCCGGCTGGGGTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATTGATCTGGACAAGATGTTGCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTGCACCGCTGGCAGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCATGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGAATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.672	98.966	0.61
pilD	Vibrio campbellii strain DS40M4	55.944	98.621	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459