Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJS45_RS00640 Genome accession   NZ_CP124744
Coordinates   150054..150578 (-) Length   174 a.a.
NCBI ID   WP_074561657.1    Uniprot ID   -
Organism   Proteus mirabilis strain WSY-114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 145054..155578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS45_RS00630 (QJS45_00630) - 148439..148858 (-) 420 WP_044702301.1 hypothetical protein -
  QJS45_RS00635 (QJS45_00635) - 148851..149894 (-) 1044 WP_139149876.1 hypothetical protein -
  QJS45_RS00640 (QJS45_00640) ssb 150054..150578 (-) 525 WP_074561657.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QJS45_RS00645 (QJS45_00645) uvrA 150831..153665 (+) 2835 WP_074561658.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18870.93 Da        Isoelectric Point: 5.2329

>NTDB_id=827854 QJS45_RS00640 WP_074561657.1 150054..150578(-) (ssb) [Proteus mirabilis strain WSY-114]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAHSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=827854 QJS45_RS00640 WP_074561657.1 150054..150578(-) (ssb) [Proteus mirabilis strain WSY-114]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACATTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.351

100

0.759
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria gonorrhoeae MS11

48.876

100

0.5
  ssb Neisseria meningitidis MC58

48.023

100

0.489