Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PMI20_RS30555 Genome accession   NZ_CP124732
Coordinates   6825172..6825684 (-) Length   170 a.a.
NCBI ID   WP_007924170.1    Uniprot ID   -
Organism   Pseudomonas sp. GM17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6820172..6830684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMI20_RS30530 (PMI20_030530) - 6820287..6821282 (+) 996 WP_007924160.1 lysylphosphatidylglycerol synthase domain-containing protein -
  PMI20_RS30535 (PMI20_030535) - 6821352..6822107 (-) 756 WP_007924162.1 alpha/beta fold hydrolase -
  PMI20_RS30540 (PMI20_030540) - 6822097..6823206 (-) 1110 WP_007924164.1 DUF3182 family protein -
  PMI20_RS30545 (PMI20_030545) - 6823389..6824387 (-) 999 WP_007924166.1 GlxA family transcriptional regulator -
  PMI20_RS30550 (PMI20_030550) - 6824491..6825045 (+) 555 WP_007924168.1 cysteine hydrolase family protein -
  PMI20_RS30555 (PMI20_030555) ssb 6825172..6825684 (-) 513 WP_007924170.1 single-stranded DNA-binding protein Machinery gene
  PMI20_RS30560 (PMI20_030560) - 6825694..6827088 (-) 1395 WP_007924171.1 MFS transporter -
  PMI20_RS30565 (PMI20_030565) uvrA 6827269..6830103 (+) 2835 WP_007924172.1 excinuclease ABC subunit UvrA -
  PMI20_RS30570 (PMI20_030570) bfr 6830195..6830659 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18933.08 Da        Isoelectric Point: 6.9855

>NTDB_id=827797 PMI20_RS30555 WP_007924170.1 6825172..6825684(-) (ssb) [Pseudomonas sp. GM17]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
NDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=827797 PMI20_RS30555 WP_007924170.1 6825172..6825684(-) (ssb) [Pseudomonas sp. GM17]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
AATGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.303

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5