Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P7I84_RS24600 Genome accession   NZ_CP124638
Coordinates   5281367..5282704 (+) Length   445 a.a.
NCBI ID   WP_282393428.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01158     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5276367..5287704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I84_RS24575 (P7I84_24585) pgeF 5276510..5277238 (-) 729 WP_004352764.1 peptidoglycan editing factor PgeF -
  P7I84_RS24580 (P7I84_24590) rluD 5277235..5278197 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P7I84_RS24585 (P7I84_24595) - 5278343..5279368 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  P7I84_RS24590 (P7I84_24600) - 5279525..5279770 (+) 246 WP_014603563.1 PP0621 family protein -
  P7I84_RS24595 (P7I84_24605) pilS 5279760..5281352 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  P7I84_RS24600 (P7I84_24610) pilR 5281367..5282704 (+) 1338 WP_282393428.1 two-component system response regulator PilR Regulator
  P7I84_RS24605 (P7I84_24615) thiO 5282750..5283844 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  P7I84_RS24610 (P7I84_24620) - 5283979..5284488 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  P7I84_RS24615 (P7I84_24625) - 5284594..5285100 (+) 507 WP_065278195.1 Tfp pilus assembly protein FimT/FimU -
  P7I84_RS24620 (P7I84_24630) pilV 5285091..5285648 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  P7I84_RS24625 (P7I84_24635) pilW 5285645..5286469 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P7I84_RS24630 (P7I84_24640) pilX 5286466..5287053 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49665.00 Da        Isoelectric Point: 6.1219

>NTDB_id=826957 P7I84_RS24600 WP_282393428.1 5281367..5282704(+) (pilR) [Pseudomonas aeruginosa strain 2021CK-01158]
MSRQKALIVDDEPDIRELLEITLGRMKLGTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=826957 P7I84_RS24600 WP_282393428.1 5281367..5282704(+) (pilR) [Pseudomonas aeruginosa strain 2021CK-01158]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGGCACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCAGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

37.946

100

0.382