Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P7I84_RS24620 Genome accession   NZ_CP124638
Coordinates   5285091..5285648 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01158     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5280091..5290648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I84_RS24600 (P7I84_24610) pilR 5281367..5282704 (+) 1338 WP_282393428.1 two-component system response regulator PilR Regulator
  P7I84_RS24605 (P7I84_24615) thiO 5282750..5283844 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  P7I84_RS24610 (P7I84_24620) - 5283979..5284488 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  P7I84_RS24615 (P7I84_24625) - 5284594..5285100 (+) 507 WP_065278195.1 Tfp pilus assembly protein FimT/FimU -
  P7I84_RS24620 (P7I84_24630) pilV 5285091..5285648 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  P7I84_RS24625 (P7I84_24635) pilW 5285645..5286469 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P7I84_RS24630 (P7I84_24640) pilX 5286466..5287053 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  P7I84_RS24635 (P7I84_24645) pilY1 5287065..5290550 (+) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=826958 P7I84_RS24620 WP_003110422.1 5285091..5285648(+) (pilV) [Pseudomonas aeruginosa strain 2021CK-01158]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=826958 P7I84_RS24620 WP_003110422.1 5285091..5285648(+) (pilV) [Pseudomonas aeruginosa strain 2021CK-01158]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984