Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QF118_RS12685 Genome accession   NZ_CP124616
Coordinates   2626406..2626936 (-) Length   176 a.a.
NCBI ID   WP_282299421.1    Uniprot ID   -
Organism   Tropicibacter oceani strain YMD87     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2621406..2631936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF118_RS12660 (QF118_12660) - 2621701..2623206 (-) 1506 WP_282299416.1 hypothetical protein -
  QF118_RS12665 (QF118_12665) - 2623196..2623345 (-) 150 WP_282299417.1 hypothetical protein -
  QF118_RS12670 (QF118_12670) - 2623443..2624015 (+) 573 WP_282299418.1 shikimate kinase -
  QF118_RS12675 (QF118_12675) aroB 2624012..2625124 (+) 1113 WP_282299419.1 3-dehydroquinate synthase -
  QF118_RS12680 (QF118_12680) - 2625191..2626255 (-) 1065 WP_282299420.1 site-2 protease family protein -
  QF118_RS12685 (QF118_12685) ssb 2626406..2626936 (-) 531 WP_282299421.1 single-stranded DNA-binding protein Machinery gene
  QF118_RS12690 (QF118_12690) - 2627153..2627695 (+) 543 WP_394357094.1 lytic transglycosylase domain-containing protein -
  QF118_RS12695 (QF118_12695) - 2627762..2629849 (-) 2088 WP_282299423.1 dipeptide ABC transporter ATP-binding protein -
  QF118_RS12700 (QF118_12700) - 2629973..2631415 (-) 1443 WP_282299424.1 ABC transporter permease -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18348.02 Da        Isoelectric Point: 5.2868

>NTDB_id=826795 QF118_RS12685 WP_282299421.1 2626406..2626936(-) (ssb) [Tropicibacter oceani strain YMD87]
MAGSVNKVILVGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGYGGSLVMLDGPQGGGSGGGGGGGYGGGAGGGYGGDSGGYDDPGYGGGPSQGSGS
GPARAPARDIDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=826795 QF118_RS12685 WP_282299421.1 2626406..2626936(-) (ssb) [Tropicibacter oceani strain YMD87]
ATGGCCGGTTCGGTAAACAAGGTGATCCTGGTGGGCAATCTGGGGCGCGACCCCGAGGTGCGCTCATTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATTGCCACATCCGAGACATGGAAGGACCGCAACACCGGCGAGCGCCGCGAAAAGACCGAAT
GGCATTCGGTCGCGATCTTCCAGGAAGGCCTGGTGCGGGTGGCTGAACAATACCTGCGCAAAGGCTCCAAGGTGTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAAAGCGGTCAGGACCGCTATTCCACCGAGGTGGTGCTTCAGGGCTA
TGGCGGATCGCTGGTCATGCTGGACGGCCCGCAGGGCGGCGGCAGTGGTGGCGGCGGCGGCGGTGGTTATGGCGGCGGCG
CGGGCGGCGGCTATGGCGGCGACAGCGGCGGCTATGACGATCCGGGTTATGGCGGCGGACCCAGCCAGGGGTCGGGATCG
GGCCCCGCACGGGCACCGGCGCGCGACATCGACGACGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.562
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.523
  ssb Neisseria meningitidis MC58

42.246

100

0.449
  ssb Neisseria gonorrhoeae MS11

42.246

100

0.449