Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   QF117_RS12130 Genome accession   NZ_CP124614
Coordinates   1306540..1307127 (+) Length   195 a.a.
NCBI ID   WP_282389153.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301540..1312127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS12110 (QF117_12110) panP 1301901..1303565 (-) 1665 WP_282389149.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  QF117_RS12115 (QF117_12115) - 1303697..1304209 (-) 513 WP_282389150.1 hypothetical protein -
  QF117_RS12120 (QF117_12120) - 1304299..1305204 (-) 906 WP_282389151.1 lysine exporter LysO family protein -
  QF117_RS12125 (QF117_12125) - 1305269..1306192 (-) 924 WP_282389152.1 HDOD domain-containing protein -
  QF117_RS12130 (QF117_12130) tfoX 1306540..1307127 (+) 588 WP_282389153.1 TfoX/Sxy family DNA transformation protein Regulator
  QF117_RS12135 (QF117_12135) - 1307286..1307825 (-) 540 WP_282389154.1 hypothetical protein -
  QF117_RS12140 (QF117_12140) - 1307996..1308493 (-) 498 WP_282389155.1 response regulator -
  QF117_RS12145 (QF117_12145) - 1308496..1310460 (-) 1965 WP_282389156.1 ATP-binding protein -
  QF117_RS12150 (QF117_12150) - 1310635..1311897 (+) 1263 WP_282389158.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22316.70 Da        Isoelectric Point: 9.2918

>NTDB_id=826776 QF117_RS12130 WP_282389153.1 1306540..1307127(+) (tfoX) [Vibrio sp. YMD68]
MDMTEQLFMDYVGDFGSFQKRSMFGGIGLFKNEAMFALLSNGRIFIRGGDQLDSRLNELGCEKYRHVKKQTTATVNYYDI
TQIFADKGDAIYEIVSESIKLSVDQRKFQKSSASRRLRDLPNMQLTLERMVKKAGIEDVETFMQLGASAVFSKVRTAYGT
DVDVKLLWKFAGAVEGIHWKLIQEPRKRQLLESCQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=826776 QF117_RS12130 WP_282389153.1 1306540..1307127(+) (tfoX) [Vibrio sp. YMD68]
ATGGATATGACAGAACAATTATTTATGGATTATGTGGGCGATTTCGGTTCTTTTCAGAAACGTTCAATGTTTGGTGGCAT
CGGCTTATTTAAAAATGAAGCGATGTTTGCTCTACTCAGTAACGGTAGAATTTTCATTCGTGGCGGAGATCAACTCGATT
CAAGGCTTAACGAACTCGGTTGTGAAAAATACCGTCATGTGAAAAAGCAAACGACAGCAACAGTAAACTACTACGATATA
ACTCAAATTTTCGCCGACAAAGGTGACGCTATTTACGAGATCGTAAGTGAGTCTATTAAATTGTCTGTGGATCAGCGTAA
GTTCCAAAAATCGTCTGCGAGTCGACGCCTGAGAGACTTACCTAACATGCAGTTGACACTAGAACGCATGGTTAAAAAGG
CAGGCATCGAGGACGTAGAAACATTCATGCAATTAGGCGCTTCGGCGGTGTTTTCTAAAGTGAGAACCGCGTACGGAACC
GATGTTGACGTTAAATTGTTATGGAAATTTGCAGGTGCAGTTGAAGGTATTCATTGGAAATTAATTCAAGAGCCTCGTAA
ACGTCAATTGTTGGAAAGCTGCCAGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.057

98.974

0.723
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.057

98.974

0.723
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.057

98.974

0.723
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.057

98.974

0.723
  tfoX Vibrio cholerae strain A1552

73.057

98.974

0.723
  tfoX Vibrio campbellii strain DS40M4

67.692

100

0.677
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.154

100

0.662
  tfoX Aliivibrio fischeri ES114

56.186

99.487

0.559