Detailed information
Bioinformatically predicted
Overview
| Name | ideA | Type | Regulator |
| Locus tag | QF117_RS08705 | Genome accession | NZ_CP124614 |
| Coordinates | 584332..585015 (-) | Length | 227 a.a. |
| NCBI ID | WP_282388590.1 | Uniprot ID | - |
| Organism | Vibrio sp. YMD68 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 578609..616103 | 584332..585015 | within | 0 |
Gene organization within MGE regions
Location: 578609..616103
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QF117_RS08690 (QF117_08690) | - | 578609..579706 (-) | 1098 | WP_282388587.1 | ISAs1 family transposase | - |
| QF117_RS08695 (QF117_08695) | - | 580157..582256 (+) | 2100 | WP_282388588.1 | AAA family ATPase | - |
| QF117_RS08700 (QF117_08700) | - | 582260..584020 (+) | 1761 | WP_282388589.1 | ATP-dependent helicase | - |
| QF117_RS08705 (QF117_08705) | ideA | 584332..585015 (-) | 684 | WP_282388590.1 | endonuclease | Regulator |
| QF117_RS08710 (QF117_08710) | - | 585116..585718 (-) | 603 | WP_282388591.1 | hypothetical protein | - |
| QF117_RS08715 (QF117_08715) | - | 586086..586412 (+) | 327 | WP_055647248.1 | hypothetical protein | - |
| QF117_RS08720 (QF117_08720) | ssb | 586428..586847 (+) | 420 | WP_282388592.1 | single-stranded DNA-binding protein | - |
| QF117_RS08725 (QF117_08725) | bet | 586927..587745 (+) | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| QF117_RS08730 (QF117_08730) | - | 587829..587972 (+) | 144 | WP_008844794.1 | hypothetical protein | - |
| QF117_RS08735 (QF117_08735) | - | 588033..589049 (+) | 1017 | WP_282388593.1 | lambda-exonuclease family protein | - |
| QF117_RS08740 (QF117_08740) | - | 589259..590218 (+) | 960 | WP_282388594.1 | AAA family ATPase | - |
| QF117_RS08745 (QF117_08745) | - | 590218..590985 (+) | 768 | WP_148505710.1 | hypothetical protein | - |
| QF117_RS08750 (QF117_08750) | - | 591083..592036 (+) | 954 | WP_143692904.1 | DUF3150 domain-containing protein | - |
| QF117_RS08755 (QF117_08755) | - | 592098..592538 (+) | 441 | WP_267385823.1 | hypothetical protein | - |
| QF117_RS08760 (QF117_08760) | - | 592607..594262 (+) | 1656 | WP_282388595.1 | VWA domain-containing protein | - |
| QF117_RS08765 (QF117_08765) | radC | 594347..594844 (+) | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| QF117_RS08770 (QF117_08770) | - | 594844..595185 (+) | 342 | WP_282388596.1 | plasmid-related protein | - |
| QF117_RS08775 (QF117_08775) | - | 595277..596350 (+) | 1074 | WP_282388597.1 | primase-helicase zinc-binding domain-containing protein | - |
| QF117_RS08780 (QF117_08780) | - | 596440..597147 (+) | 708 | WP_282388599.1 | hypothetical protein | - |
| QF117_RS08785 (QF117_08785) | - | 597510..598574 (+) | 1065 | WP_102887294.1 | hypothetical protein | - |
| QF117_RS08790 (QF117_08790) | - | 598778..599722 (+) | 945 | WP_282388600.1 | thioredoxin family protein | - |
| QF117_RS08795 (QF117_08795) | - | 599725..601113 (+) | 1389 | WP_282388601.1 | conjugal transfer protein TraH | - |
| QF117_RS08800 (QF117_08800) | - | 601117..604686 (+) | 3570 | WP_282388602.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| QF117_RS08805 (QF117_08805) | eexR | 604719..605150 (-) | 432 | WP_282388603.1 | entry exclusion protein EexR | - |
| QF117_RS08810 (QF117_08810) | - | 605208..605741 (-) | 534 | WP_000566753.1 | FlhC family transcriptional regulator | - |
| QF117_RS08815 (QF117_08815) | - | 605738..606037 (-) | 300 | WP_115113645.1 | flagellar transcriptional regulator FlhD | - |
| QF117_RS08820 (QF117_08820) | - | 606034..606582 (-) | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| QF117_RS08825 (QF117_08825) | - | 606569..607231 (-) | 663 | WP_032481453.1 | DUF6475 domain-containing protein | - |
| QF117_RS08830 (QF117_08830) | - | 607218..608087 (-) | 870 | WP_008843243.1 | hypothetical protein | - |
| QF117_RS08835 (QF117_08835) | - | 608143..608394 (-) | 252 | WP_024015942.1 | helix-turn-helix domain-containing protein | - |
| QF117_RS08840 (QF117_08840) | - | 608512..609159 (+) | 648 | WP_007105457.1 | LexA family transcriptional regulator | - |
| QF117_RS08845 (QF117_08845) | prfC | 609416..611005 (+) | 1590 | WP_282388606.1 | peptide chain release factor 3 | - |
| QF117_RS08850 (QF117_08850) | srmB | 611176..612426 (-) | 1251 | WP_017035484.1 | ATP-dependent RNA helicase SrmB | - |
| QF117_RS08855 (QF117_08855) | - | 612517..613236 (-) | 720 | WP_282388607.1 | methyltransferase | - |
| QF117_RS08860 (QF117_08860) | brnQ | 613544..614857 (+) | 1314 | WP_282388608.1 | branched-chain amino acid transport system II carrier protein | - |
| QF117_RS08865 (QF117_08865) | prfB | 615005..616103 (+) | 1099 | WP_282388609.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 227 a.a. Molecular weight: 26346.47 Da Isoelectric Point: 7.2403
>NTDB_id=826768 QF117_RS08705 WP_282388590.1 584332..585015(-) (ideA) [Vibrio sp. YMD68]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPGFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPYEPRSYGLCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSKMDPLDEWEKVRDLKIKGIQGNSNCHVSDSC
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPGFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPYEPRSYGLCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSKMDPLDEWEKVRDLKIKGIQGNSNCHVSDSC
Nucleotide
Download Length: 684 bp
>NTDB_id=826768 QF117_RS08705 WP_282388590.1 584332..585015(-) (ideA) [Vibrio sp. YMD68]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCAATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGGGTTTTCTAAAATGGTGTCGGATCTCCATAACCTCGTACCATCAGTAGGAGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGTATGAACCAAGATCCTATGGTCTATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAATCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAAAATGGACCCTTTGGACGAATGGGAAAAAGTACGTGATTTGAAGATTAAAG
GCATTCAAGGTAATTCTAATTGCCATGTATCAGATAGCTGTTAA
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCAATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGGGTTTTCTAAAATGGTGTCGGATCTCCATAACCTCGTACCATCAGTAGGAGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGTATGAACCAAGATCCTATGGTCTATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAATCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAAAATGGACCCTTTGGACGAATGGGAAAAAGTACGTGATTTGAAGATTAAAG
GCATTCAAGGTAATTCTAATTGCCATGTATCAGATAGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ideA | Vibrio cholerae O1 str. 2010EL-1786 |
94.273 |
100 |
0.943 |
| dns | Vibrio parahaemolyticus RIMD 2210633 |
52.838 |
100 |
0.533 |
| dns | Aliivibrio fischeri ES114 |
51.739 |
100 |
0.524 |
| dns | Vibrio cholerae strain A1552 |
50.667 |
99.119 |
0.502 |
| dns | Campylobacter jejuni RM1221 |
39.07 |
94.714 |
0.37 |