Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QF117_RS06960 Genome accession   NZ_CP124614
Coordinates   222749..223339 (+) Length   196 a.a.
NCBI ID   WP_282388353.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217749..228339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS06945 (QF117_06945) - 218326..220917 (-) 2592 WP_282388351.1 PBP1A family penicillin-binding protein -
  QF117_RS06950 (QF117_06950) pilM 221058..222056 (+) 999 WP_282388352.1 type IV pilus assembly protein PilM Machinery gene
  QF117_RS06955 (QF117_06955) - 222046..222582 (+) 537 Protein_194 PilN domain-containing protein -
  QF117_RS06960 (QF117_06960) pilO 222749..223339 (+) 591 WP_282388353.1 type 4a pilus biogenesis protein PilO Machinery gene
  QF117_RS06965 (QF117_06965) pilP 223329..223844 (+) 516 WP_282388354.1 pilus assembly protein PilP Machinery gene
  QF117_RS06970 (QF117_06970) - 223961..225580 (+) 1620 Protein_197 type IV pilus secretin PilQ family protein -
  QF117_RS06975 (QF117_06975) aroK 225769..226287 (+) 519 WP_017036110.1 shikimate kinase AroK -
  QF117_RS06980 (QF117_06980) aroB 226313..227419 (+) 1107 WP_282388356.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22905.32 Da        Isoelectric Point: 4.7023

>NTDB_id=826763 QF117_RS06960 WP_282388353.1 222749..223339(+) (pilO) [Vibrio sp. YMD68]
MVNFRDLDIDEVTEWPLLPQVMVLLLLLILLQGVGSWFYILPKIEQLEALKNEEQTLKSTLRIKANKAATLPVLRAQLDE
LEERYDYLLRQLPEQKELASMLASVNEFGLKNSLTFTRIDWGQRQNQTFLYRLPLNFELTGSYDNIGHFSEAIANLPRII
VLEDIDWQRVSQESSTLHFRVRAYTYQFKAEVKDEG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=826763 QF117_RS06960 WP_282388353.1 222749..223339(+) (pilO) [Vibrio sp. YMD68]
ATGGTTAATTTTCGAGATCTGGACATCGATGAAGTGACCGAGTGGCCTTTATTGCCTCAGGTGATGGTATTGCTGCTACT
CCTTATTCTCTTACAGGGCGTTGGTAGCTGGTTTTATATTTTACCTAAAATAGAACAGCTTGAAGCACTGAAAAATGAAG
AGCAAACACTGAAGTCAACCTTGCGAATAAAAGCCAATAAAGCGGCCACTCTACCCGTATTACGTGCTCAGCTTGATGAG
CTAGAAGAACGATACGATTACCTGTTGCGTCAGTTACCGGAACAGAAAGAGTTGGCAAGCATGTTGGCATCGGTCAATGA
GTTTGGCTTAAAGAATTCACTGACCTTCACGCGTATCGATTGGGGTCAAAGGCAGAATCAGACGTTTCTGTATCGGTTGC
CTCTCAACTTTGAACTGACGGGAAGTTACGACAACATCGGTCATTTTTCAGAGGCCATTGCGAACCTACCAAGAATCATC
GTTCTTGAAGACATTGATTGGCAACGAGTGAGCCAAGAAAGCAGCACATTGCATTTCCGTGTACGCGCATATACCTATCA
ATTCAAAGCGGAGGTCAAAGATGAAGGCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

70.256

99.49

0.699
  pilO Vibrio campbellii strain DS40M4

65.079

96.429

0.628