Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QF117_RS06965 Genome accession   NZ_CP124614
Coordinates   223329..223844 (+) Length   171 a.a.
NCBI ID   WP_282388354.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218329..228844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS06950 (QF117_06950) pilM 221058..222056 (+) 999 WP_282388352.1 type IV pilus assembly protein PilM Machinery gene
  QF117_RS06955 (QF117_06955) - 222046..222582 (+) 537 Protein_194 PilN domain-containing protein -
  QF117_RS06960 (QF117_06960) pilO 222749..223339 (+) 591 WP_282388353.1 type 4a pilus biogenesis protein PilO Machinery gene
  QF117_RS06965 (QF117_06965) pilP 223329..223844 (+) 516 WP_282388354.1 pilus assembly protein PilP Machinery gene
  QF117_RS06970 (QF117_06970) - 223961..225580 (+) 1620 Protein_197 type IV pilus secretin PilQ family protein -
  QF117_RS06975 (QF117_06975) aroK 225769..226287 (+) 519 WP_017036110.1 shikimate kinase AroK -
  QF117_RS06980 (QF117_06980) aroB 226313..227419 (+) 1107 WP_282388356.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19051.14 Da        Isoelectric Point: 9.9445

>NTDB_id=826764 QF117_RS06965 WP_282388354.1 223329..223844(+) (pilP) [Vibrio sp. YMD68]
MKANGFFLFLCAGFLIGCQANNDSIDEYIQAIESQARKEVVRLEPVIMFQASAYQSTELREPFFLPSAALVQEQAMVKKD
CWQPPKRTKSGPLERYPMSKLRLKGVMGSANRVSALVQTPKGQVVNVSEGQFIGLNNGRVTRVTSHYVLINETLPDGLGC
WSKRNVKLALK

Nucleotide


Download         Length: 516 bp        

>NTDB_id=826764 QF117_RS06965 WP_282388354.1 223329..223844(+) (pilP) [Vibrio sp. YMD68]
ATGAAGGCTAATGGTTTTTTTCTTTTTCTCTGCGCGGGCTTTCTGATCGGTTGCCAAGCCAACAATGACTCGATCGATGA
GTATATTCAGGCCATTGAATCCCAGGCCCGTAAAGAGGTTGTTCGCCTAGAGCCCGTGATTATGTTTCAAGCTTCCGCTT
ACCAAAGTACTGAACTTCGTGAACCGTTTTTTTTACCCAGTGCGGCACTGGTGCAAGAGCAGGCCATGGTTAAAAAAGAT
TGTTGGCAACCCCCAAAGCGAACCAAATCAGGGCCGCTTGAACGCTATCCAATGAGTAAGTTGAGATTAAAAGGCGTCAT
GGGGAGTGCGAATAGGGTGTCAGCGCTCGTCCAAACACCTAAAGGTCAAGTGGTCAACGTGAGTGAGGGGCAGTTTATTG
GTCTTAATAACGGCAGAGTCACTAGGGTGACATCTCATTATGTGTTGATCAATGAAACGCTGCCCGATGGCCTAGGTTGC
TGGAGTAAGCGTAACGTCAAGCTTGCTCTTAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

58.14

100

0.585
  pilP Vibrio campbellii strain DS40M4

48.538

100

0.485