Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QIU11_RS27120 Genome accession   NZ_CP124600
Coordinates   5699049..5700386 (+) Length   445 a.a.
NCBI ID   WP_058177112.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Li010     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5694049..5705386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIU11_RS27095 (QIU11_27095) pgeF 5694192..5694920 (-) 729 WP_003112833.1 peptidoglycan editing factor PgeF -
  QIU11_RS27100 (QIU11_27100) rluD 5694917..5695879 (-) 963 WP_023090094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QIU11_RS27105 (QIU11_27105) - 5696025..5697050 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  QIU11_RS27110 (QIU11_27110) - 5697207..5697452 (+) 246 WP_003102591.1 PP0621 family protein -
  QIU11_RS27115 (QIU11_27115) pilS 5697442..5699034 (+) 1593 WP_023084774.1 two-component system sensor histidine kinase PilS Regulator
  QIU11_RS27120 (QIU11_27120) pilR 5699049..5700386 (+) 1338 WP_058177112.1 two-component system response regulator PilR Regulator
  QIU11_RS27125 (QIU11_27125) thiO 5700432..5701526 (-) 1095 WP_058177126.1 glycine oxidase ThiO -
  QIU11_RS27130 (QIU11_27130) - 5701661..5702170 (+) 510 WP_023084776.1 Tfp pilus assembly protein FimT/FimU -
  QIU11_RS27135 (QIU11_27135) - 5702276..5702782 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QIU11_RS27140 (QIU11_27140) pilV 5702773..5703330 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QIU11_RS27145 (QIU11_27145) pilW 5703327..5704151 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QIU11_RS27150 (QIU11_27150) pilX 5704148..5704735 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49795.10 Da        Isoelectric Point: 5.6424

>NTDB_id=826567 QIU11_RS27120 WP_058177112.1 5699049..5700386(+) (pilR) [Pseudomonas aeruginosa strain Li010]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQDLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=826567 QIU11_RS27120 WP_058177112.1 5699049..5700386(+) (pilR) [Pseudomonas aeruginosa strain Li010]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGACCTGTTCCAGGCCGCCAGCGGCGGCACTCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526
  luxO Vibrio cholerae strain A1552

37.946

100

0.382