Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QIU11_RS27140 Genome accession   NZ_CP124600
Coordinates   5702773..5703330 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Li010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5697773..5708330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIU11_RS27120 (QIU11_27120) pilR 5699049..5700386 (+) 1338 WP_058177112.1 two-component system response regulator PilR Regulator
  QIU11_RS27125 (QIU11_27125) thiO 5700432..5701526 (-) 1095 WP_058177126.1 glycine oxidase ThiO -
  QIU11_RS27130 (QIU11_27130) - 5701661..5702170 (+) 510 WP_023084776.1 Tfp pilus assembly protein FimT/FimU -
  QIU11_RS27135 (QIU11_27135) - 5702276..5702782 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QIU11_RS27140 (QIU11_27140) pilV 5702773..5703330 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QIU11_RS27145 (QIU11_27145) pilW 5703327..5704151 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QIU11_RS27150 (QIU11_27150) pilX 5704148..5704735 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QIU11_RS27155 (QIU11_27155) pilY1 5704747..5708238 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=826568 QIU11_RS27140 WP_003119423.1 5702773..5703330(+) (pilV) [Pseudomonas aeruginosa strain Li010]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=826568 QIU11_RS27140 WP_003119423.1 5702773..5703330(+) (pilV) [Pseudomonas aeruginosa strain Li010]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995