Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE698_RS01365 Genome accession   NZ_CP138428
Coordinates   293719..294255 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 6EVA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 288719..299255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE698_RS01345 aphA 289008..289721 (+) 714 WP_024199139.1 acid phosphatase AphA -
  SE698_RS01350 yjbQ 289832..290248 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SE698_RS01355 yjbR 290252..290608 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SE698_RS01360 uvrA 290643..293465 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SE698_RS01365 ssb 293719..294255 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SE698_RS01370 yjcB 294354..294635 (-) 282 WP_001295689.1 YjcB family protein -
  SE698_RS01375 pdeC 295065..296652 (+) 1588 Protein_257 c-di-GMP phosphodiesterase PdeC -
  SE698_RS01380 soxS 296655..296978 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SE698_RS01385 soxR 297064..297528 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=826432 SE698_RS01365 WP_000168305.1 293719..294255(+) (ssb) [Escherichia coli strain 6EVA]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=826432 SE698_RS01365 WP_000168305.1 293719..294255(+) (ssb) [Escherichia coli strain 6EVA]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489