Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJV49_RS06760 Genome accession   NZ_CP124538
Coordinates   1350822..1351322 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus sp. NH2-7C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1350822..1375641 1350822..1351322 within 0


Gene organization within MGE regions


Location: 1350822..1375641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS06760 (QJV49_06760) ssb 1350822..1351322 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  QJV49_RS06765 (QJV49_06765) rpsF 1351352..1351645 (-) 294 WP_225513129.1 30S ribosomal protein S6 -
  QJV49_RS06770 (QJV49_06770) - 1351836..1352690 (-) 855 WP_241893070.1 undecaprenyl-diphosphate phosphatase -
  QJV49_RS06775 (QJV49_06775) - 1353208..1354674 (+) 1467 WP_225513076.1 amino acid permease -
  QJV49_RS06780 (QJV49_06780) dnaX 1354708..1356366 (-) 1659 WP_225513074.1 DNA polymerase III subunit gamma/tau -
  QJV49_RS06785 (QJV49_06785) - 1356415..1357056 (-) 642 WP_225513073.1 phosphotransferase -
  QJV49_RS06790 (QJV49_06790) - 1357087..1357575 (-) 489 WP_003131959.1 GAF domain-containing protein -
  QJV49_RS06795 (QJV49_06795) - 1357919..1358071 (+) 153 WP_281449117.1 hypothetical protein -
  QJV49_RS06800 (QJV49_06800) - 1358112..1358384 (+) 273 WP_281449118.1 chorismate mutase -
  QJV49_RS06805 (QJV49_06805) - 1358473..1358919 (-) 447 WP_225513071.1 hypothetical protein -
  QJV49_RS06810 (QJV49_06810) - 1359209..1360393 (-) 1185 WP_225513070.1 site-specific integrase -
  QJV49_RS06815 (QJV49_06815) - 1360651..1360956 (-) 306 WP_012898670.1 bacteriocin immunity protein -
  QJV49_RS06820 (QJV49_06820) - 1361078..1361242 (-) 165 WP_058224134.1 hypothetical protein -
  QJV49_RS06825 (QJV49_06825) - 1361604..1361945 (-) 342 WP_225513069.1 hypothetical protein -
  QJV49_RS06830 (QJV49_06830) - 1362224..1362547 (-) 324 WP_058223674.1 hypothetical protein -
  QJV49_RS06835 (QJV49_06835) - 1363330..1363875 (-) 546 WP_017865215.1 GNAT family N-acetyltransferase -
  QJV49_RS06840 (QJV49_06840) - 1364696..1365304 (-) 609 WP_225513068.1 helix-turn-helix domain-containing protein -
  QJV49_RS06845 (QJV49_06845) - 1365468..1365662 (+) 195 WP_225513067.1 transcriptional regulator -
  QJV49_RS06850 (QJV49_06850) - 1365838..1366530 (+) 693 WP_281449119.1 Bro-N domain-containing protein -
  QJV49_RS06855 (QJV49_06855) - 1366605..1366799 (+) 195 WP_025016970.1 DUF1655 domain-containing protein -
  QJV49_RS06860 (QJV49_06860) - 1366803..1367327 (+) 525 WP_225513237.1 hypothetical protein -
  QJV49_RS06865 (QJV49_06865) - 1367324..1367575 (+) 252 WP_225513235.1 helix-turn-helix transcriptional regulator -
  QJV49_RS06870 (QJV49_06870) - 1367572..1367853 (+) 282 WP_225513234.1 hypothetical protein -
  QJV49_RS06875 (QJV49_06875) - 1367896..1368135 (+) 240 WP_139008467.1 hypothetical protein -
  QJV49_RS06880 (QJV49_06880) - 1368132..1368386 (+) 255 WP_225513179.1 hypothetical protein -
  QJV49_RS06885 (QJV49_06885) - 1368383..1368694 (+) 312 WP_225513181.1 hypothetical protein -
  QJV49_RS06890 (QJV49_06890) - 1368691..1369017 (+) 327 WP_225513183.1 HTH domain-containing protein -
  QJV49_RS06895 (QJV49_06895) - 1369135..1370820 (+) 1686 WP_225513184.1 hypothetical protein -
  QJV49_RS06900 (QJV49_06900) - 1371192..1371776 (+) 585 WP_225513185.1 hypothetical protein -
  QJV49_RS06905 (QJV49_06905) - 1371948..1373189 (+) 1242 WP_281449120.1 phage major capsid protein -
  QJV49_RS06910 (QJV49_06910) - 1373208..1373828 (+) 621 WP_225513217.1 hypothetical protein -
  QJV49_RS06915 (QJV49_06915) - 1373908..1374216 (+) 309 WP_309568386.1 sigma factor-like helix-turn-helix DNA-binding protein -
  QJV49_RS06920 (QJV49_06920) - 1374232..1374750 (+) 519 WP_225513214.1 HNH endonuclease -
  QJV49_RS06925 (QJV49_06925) - 1375441..1375641 (+) 201 WP_003131983.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=826341 QJV49_RS06760 WP_003131953.1 1350822..1351322(-) (ssb) [Lactococcus sp. NH2-7C]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=826341 QJV49_RS06760 WP_003131953.1 1350822..1351322(-) (ssb) [Lactococcus sp. NH2-7C]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGGC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373