Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QF092_RS02335 Genome accession   NZ_CP124535
Coordinates   476400..476951 (-) Length   183 a.a.
NCBI ID   WP_281467261.1    Uniprot ID   -
Organism   Fuscovulum ytuae strain YMD61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 471400..481951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF092_RS02310 (QF092_02310) tpiA 471607..472350 (-) 744 WP_281467251.1 triose-phosphate isomerase -
  QF092_RS02315 (QF092_02315) - 472540..472899 (-) 360 WP_281467253.1 HesB/IscA family protein -
  QF092_RS02320 (QF092_02320) - 472972..473331 (-) 360 WP_281467255.1 SUF system Fe-S cluster assembly protein -
  QF092_RS02325 (QF092_02325) - 473402..474985 (-) 1584 WP_281467257.1 CRTAC1 family protein -
  QF092_RS02330 (QF092_02330) - 474990..476300 (-) 1311 WP_281467259.1 vanadium-dependent haloperoxidase -
  QF092_RS02335 (QF092_02335) ssb 476400..476951 (-) 552 WP_281467261.1 single-stranded DNA-binding protein Machinery gene
  QF092_RS02340 (QF092_02340) - 477670..477927 (+) 258 WP_281467263.1 PepSY domain-containing protein -
  QF092_RS02345 (QF092_02345) - 477999..478514 (+) 516 WP_281467265.1 cytochrome b/b6 domain-containing protein -
  QF092_RS02350 (QF092_02350) - 478582..479085 (+) 504 WP_281467267.1 helix-turn-helix transcriptional regulator -
  QF092_RS02355 (QF092_02355) - 479188..479784 (+) 597 WP_281467269.1 lytic transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18771.35 Da        Isoelectric Point: 5.3111

>NTDB_id=826300 QF092_RS02335 WP_281467261.1 476400..476951(-) (ssb) [Fuscovulum ytuae strain YMD61]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSETWRDRNTGERKERTEWHSVAIFNENLAKIAEQYLRKGSTVYI
EGALETRKWQDQSGQDRYTTEIVLRPYNGNLTLLGGRGDGGGSGGGGGDYGGGYDDYQGGGAGGGYSGGGAGAGGGGARS
GGGGFGGGAGGGGRADMDDEIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=826300 QF092_RS02335 WP_281467261.1 476400..476951(-) (ssb) [Fuscovulum ytuae strain YMD61]
ATGGCAGGTTCGGTCAACAAGGTGATCATCATCGGCAATCTTGGGCGCGACCCCGAGGTGCGCAGCTTCCAAAACGGCGG
CAAGGTGGTGAACCTGCGCATCGCCACCTCGGAAACTTGGCGTGACCGCAACACGGGCGAACGCAAGGAACGCACCGAAT
GGCATTCGGTCGCCATCTTCAATGAAAACCTCGCCAAGATCGCCGAGCAATATCTGCGCAAAGGTTCCACCGTCTATATC
GAAGGCGCGCTGGAAACCCGCAAATGGCAGGATCAATCCGGGCAGGATCGCTATACGACCGAAATCGTCCTGCGCCCCTA
TAACGGCAACCTCACGCTGCTGGGTGGGCGTGGCGATGGCGGCGGTTCGGGCGGCGGCGGCGGTGATTACGGCGGCGGCT
ATGATGATTATCAGGGCGGCGGCGCAGGCGGCGGCTATTCCGGCGGTGGTGCTGGCGCTGGCGGCGGCGGCGCGCGCAGC
GGTGGCGGCGGCTTTGGCGGCGGCGCGGGCGGCGGCGGTCGCGCCGATATGGATGACGAAATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.721

97.814

0.486
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.481
  ssb Neisseria meningitidis MC58

41.111

98.361

0.404
  ssb Neisseria gonorrhoeae MS11

41.111

98.361

0.404