Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE695_RS01375 Genome accession   NZ_CP138419
Coordinates   276606..277142 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 30EVA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 271606..282142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE695_RS01355 aphA 271895..272608 (+) 714 WP_001395166.1 acid phosphatase AphA -
  SE695_RS01360 yjbQ 272719..273135 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SE695_RS01365 yjbR 273139..273495 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SE695_RS01370 uvrA 273530..276352 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SE695_RS01375 ssb 276606..277142 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SE695_RS01380 yjcB 277241..277522 (-) 282 WP_001295689.1 YjcB family protein -
  SE695_RS01385 pdeC 277952..279538 (+) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  SE695_RS01390 soxS 279541..279864 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SE695_RS01395 soxR 279950..280414 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=826182 SE695_RS01375 WP_000168305.1 276606..277142(+) (ssb) [Escherichia coli strain 30EVA2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=826182 SE695_RS01375 WP_000168305.1 276606..277142(+) (ssb) [Escherichia coli strain 30EVA2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489