Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE693_RS02915 Genome accession   NZ_CP138412
Coordinates   623079..623615 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 50EVA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 618079..628615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE693_RS02895 soxR 619807..620271 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  SE693_RS02900 soxS 620357..620680 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SE693_RS02905 pdeC 620683..622269 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  SE693_RS02910 yjcB 622699..622980 (+) 282 WP_001341690.1 YjcB family protein -
  SE693_RS02915 ssb 623079..623615 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SE693_RS02920 uvrA 623869..626691 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SE693_RS02925 yjbR 626726..627082 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SE693_RS02930 yjbQ 627086..627502 (-) 417 WP_023143127.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SE693_RS02935 aphA 627613..628326 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=826019 SE693_RS02915 WP_000168305.1 623079..623615(-) (ssb) [Escherichia coli strain 50EVA]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=826019 SE693_RS02915 WP_000168305.1 623079..623615(-) (ssb) [Escherichia coli strain 50EVA]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489