Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE699_RS23105 Genome accession   NZ_CP138399
Coordinates   4734526..4735062 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 64EVA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4729526..4740062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE699_RS23085 soxR 4731254..4731718 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  SE699_RS23090 soxS 4731804..4732127 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  SE699_RS23095 pdeC 4732130..4733716 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  SE699_RS23100 yjcB 4734146..4734427 (+) 282 WP_001295689.1 YjcB family protein -
  SE699_RS23105 ssb 4734526..4735062 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SE699_RS23110 uvrA 4735316..4738138 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  SE699_RS23115 yjbR 4738173..4738529 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  SE699_RS23120 yjbQ 4738533..4738949 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SE699_RS23125 aphA 4739060..4739773 (-) 714 WP_086483039.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=825930 SE699_RS23105 WP_000168305.1 4734526..4735062(-) (ssb) [Escherichia coli strain 64EVA]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=825930 SE699_RS23105 WP_000168305.1 4734526..4735062(-) (ssb) [Escherichia coli strain 64EVA]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489