Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJP78_RS23360 Genome accession   NZ_CP124475
Coordinates   4690125..4690661 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain AVS0969     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4685125..4695661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP78_RS23340 (QJP78_23340) soxR 4686854..4687318 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  QJP78_RS23345 (QJP78_23345) soxS 4687404..4687727 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QJP78_RS23350 (QJP78_23350) pdeC 4687730..4689316 (-) 1587 WP_001545711.1 c-di-GMP phosphodiesterase PdeC -
  QJP78_RS23355 (QJP78_23355) yjcB 4689745..4690026 (+) 282 WP_001296643.1 YjcB family protein -
  QJP78_RS23360 (QJP78_23360) ssb 4690125..4690661 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QJP78_RS23365 (QJP78_23365) uvrA 4690916..4693738 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  QJP78_RS23370 (QJP78_23370) yjbR 4693773..4694129 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QJP78_RS23375 (QJP78_23375) yjbQ 4694133..4694549 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QJP78_RS23380 (QJP78_23380) aphA 4694660..4695373 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=825837 QJP78_RS23360 WP_000168305.1 4690125..4690661(-) (ssb) [Escherichia coli strain AVS0969]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=825837 QJP78_RS23360 WP_000168305.1 4690125..4690661(-) (ssb) [Escherichia coli strain AVS0969]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489