Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QJB07_RS10780 Genome accession   NZ_CP124398
Coordinates   2225813..2226937 (-) Length   374 a.a.
NCBI ID   WP_317033337.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0967     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2223397..2232895 2225813..2226937 within 0


Gene organization within MGE regions


Location: 2223397..2232895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJB07_RS10760 (QJB07_10745) aroE 2223397..2224215 (-) 819 WP_000451255.1 shikimate dehydrogenase -
  QJB07_RS10765 (QJB07_10750) tsaC 2224220..2224792 (-) 573 WP_001296460.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  QJB07_RS10770 (QJB07_10755) yrdD 2224797..2225339 (-) 543 WP_001296461.1 type I DNA topoisomerase -
  QJB07_RS10775 (QJB07_10760) smg 2225368..2225841 (-) 474 WP_000460673.1 DUF494 family protein Smg -
  QJB07_RS10780 (QJB07_10765) dprA 2225813..2226937 (-) 1125 WP_317033337.1 DNA-protecting protein DprA Machinery gene
  QJB07_RS10785 (QJB07_10770) def 2227067..2227576 (+) 510 WP_000114984.1 peptide deformylase -
  QJB07_RS10790 (QJB07_10775) fmt 2227591..2228538 (+) 948 WP_000004421.1 methionyl-tRNA formyltransferase -
  QJB07_RS10795 (QJB07_10780) rsmB 2228590..2229879 (+) 1290 WP_000744765.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QJB07_RS10800 (QJB07_10785) trkA 2229901..2231277 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  QJB07_RS10805 (QJB07_10790) mscL 2231407..2231820 (+) 414 WP_000022450.1 large-conductance mechanosensitive channel protein MscL -
  QJB07_RS10810 (QJB07_10795) arfA 2231817..2232035 (-) 219 WP_000092695.1 alternative ribosome-rescue factor ArfA -
  QJB07_RS10815 (QJB07_10800) zntR 2232091..2232516 (-) 426 WP_000285610.1 Zn(2+)-responsive transcriptional regulator -
  QJB07_RS10820 (QJB07_10805) yhdN 2232527..2232895 (-) 369 WP_000266504.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40940.88 Da        Isoelectric Point: 6.0395

>NTDB_id=825509 QJB07_RS10780 WP_317033337.1 2225813..2226937(-) (dprA) [Escherichia coli strain AVS0967]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWITAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=825509 QJB07_RS10780 WP_317033337.1 2225813..2226937(-) (dprA) [Escherichia coli strain AVS0967]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT
TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAGGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCACAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

44.214

90.107

0.398
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39