NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	QJB01_RS15280	Genome accession	NZ_CP124387
Coordinates	3166024..3166560 (+)	Length	178 a.a.
NCBI ID	WP_000168305.1	Uniprot ID	A0A9P2PPK2
Organism	Escherichia coli strain AVS0972
Function	ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3159215..3178841	3166024..3166560	within	0

Gene organization within MGE regions

Location: 3159215..3178841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJB01_RS15255 (QJB01_15255)	-	3159215..3161035 (-)	1821	WP_000704416.1	ATP-binding protein	-
QJB01_RS15260 (QJB01_15260)	aphA	3161312..3162025 (+)	714	WP_001226933.1	acid phosphatase AphA	-
QJB01_RS15265 (QJB01_15265)	yjbQ	3162136..3162552 (+)	417	WP_000270369.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
QJB01_RS15270 (QJB01_15270)	yjbR	3162556..3162912 (+)	357	WP_000153726.1	MmcQ/YjbR family DNA-binding protein	-
QJB01_RS15275 (QJB01_15275)	uvrA	3162947..3165769 (-)	2823	WP_000357755.1	excinuclease ABC subunit UvrA	-
QJB01_RS15280 (QJB01_15280)	ssb	3166024..3166560 (+)	537	WP_000168305.1	single-stranded DNA-binding protein SSB1	Machinery gene
QJB01_RS15285 (QJB01_15285)	-	3166719..3167966 (+)	1248	WP_000414651.1	site-specific integrase	-
QJB01_RS15290 (QJB01_15290)	-	3167959..3169491 (+)	1533	WP_001061276.1	site-specific integrase	-
QJB01_RS15295 (QJB01_15295)	-	3169508..3171541 (+)	2034	WP_000807722.1	hypothetical protein	-
QJB01_RS15300 (QJB01_15300)	-	3171534..3171953 (+)	420	WP_001062122.1	hypothetical protein	-
QJB01_RS15305 (QJB01_15305)	avs4	3172029..3176792 (+)	4764	WP_000240574.1	AVAST type 4 anti-phage nuclease Avs4	-
QJB01_RS15310 (QJB01_15310)	-	3177331..3178152 (-)	822	WP_001272932.1	abortive infection system antitoxin AbiGi family protein	-
QJB01_RS15315 (QJB01_15315)	yjcB	3178560..3178841 (-)	282	WP_001296643.1	YjcB family protein	-

Sequence

Protein

Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358

                                >NTDB_id=825472 QJB01_RS15280 WP_000168305.1 3166024..3166560(+) (ssb) [Escherichia coli strain AVS0972]

MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI

EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA

PAAPSNEPPMDFDDDIPF

Nucleotide

Download Length: 537 bp

                                >NTDB_id=825472 QJB01_RS15280 WP_000168305.1 3166024..3166560(+) (ssb) [Escherichia coli strain AVS0972]

ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG

TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG

AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC

GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG

CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG

GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT

CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Vibrio cholerae strain A1552	74.444	100	0.753
ssb	Glaesserella parasuis strain SC1401	57.923	100	0.596
ssb	Neisseria meningitidis MC58	48.066	100	0.489
ssb	Neisseria gonorrhoeae MS11	48.066	100	0.489

Detailed information NTG0825472