Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QJB01_RS10785 Genome accession   NZ_CP124387
Coordinates   2230526..2231650 (-) Length   374 a.a.
NCBI ID   WP_000228517.1    Uniprot ID   E2QFE2
Organism   Escherichia coli strain AVS0972     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2228110..2237608 2230526..2231650 within 0


Gene organization within MGE regions


Location: 2228110..2237608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJB01_RS10765 (QJB01_10765) aroE 2228110..2228928 (-) 819 WP_000451255.1 shikimate dehydrogenase -
  QJB01_RS10770 (QJB01_10770) tsaC 2228933..2229505 (-) 573 WP_001296460.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  QJB01_RS10775 (QJB01_10775) yrdD 2229510..2230052 (-) 543 WP_001296461.1 type I DNA topoisomerase -
  QJB01_RS10780 (QJB01_10780) smg 2230081..2230554 (-) 474 WP_000460673.1 DUF494 family protein Smg -
  QJB01_RS10785 (QJB01_10785) dprA 2230526..2231650 (-) 1125 WP_000228517.1 DNA-protecting protein DprA Machinery gene
  QJB01_RS10790 (QJB01_10790) def 2231780..2232289 (+) 510 WP_000114984.1 peptide deformylase -
  QJB01_RS10795 (QJB01_10795) fmt 2232304..2233251 (+) 948 WP_000004421.1 methionyl-tRNA formyltransferase -
  QJB01_RS10800 (QJB01_10800) rsmB 2233303..2234592 (+) 1290 WP_000744765.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QJB01_RS10805 (QJB01_10805) trkA 2234614..2235990 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  QJB01_RS10810 (QJB01_10810) mscL 2236120..2236533 (+) 414 WP_000022450.1 large-conductance mechanosensitive channel protein MscL -
  QJB01_RS10815 (QJB01_10815) arfA 2236530..2236748 (-) 219 WP_000092695.1 alternative ribosome-rescue factor ArfA -
  QJB01_RS10820 (QJB01_10820) zntR 2236804..2237229 (-) 426 WP_000285610.1 Zn(2+)-responsive transcriptional regulator -
  QJB01_RS10825 (QJB01_10825) yhdN 2237240..2237608 (-) 369 WP_000266504.1 DUF1992 domain-containing protein -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40910.86 Da        Isoelectric Point: 6.0395

>NTDB_id=825464 QJB01_RS10785 WP_000228517.1 2230526..2231650(-) (dprA) [Escherichia coli strain AVS0972]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=825464 QJB01_RS10785 WP_000228517.1 2230526..2231650(-) (dprA) [Escherichia coli strain AVS0972]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT
TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAGGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB E2QFE2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481

  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409

  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404

  dprA Haemophilus influenzae Rd KW20

44.214

90.107

0.398

  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39