Detailed information NTG0082514

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PRtIB026_RS10820
• Genome accession: NZ_AP023348
• Coordinates: 2381263..2383467 (+)
• Length: 734 a.a.
• NCBI ID: WP_203647557.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RtIB026
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2376263..2388467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PRtIB026_RS10790 (PRtIB026_40720)	-	2377121..2377360 (-)	240	WP_203647563.1	DUF3077 domain-containing protein	-
PRtIB026_RS10795 (PRtIB026_40710)	-	2377357..2377596 (-)	240	WP_203647562.1	hypothetical protein	-
PRtIB026_RS10800 (PRtIB026_40700)	-	2378129..2378752 (+)	624	WP_203647561.1	glutathione S-transferase	-
PRtIB026_RS10805 (PRtIB026_40690)	-	2378885..2379817 (+)	933	WP_203647560.1	ABC transporter ATP-binding protein	-
PRtIB026_RS10810 (PRtIB026_40680)	-	2379814..2380593 (+)	780	WP_203647559.1	ABC transporter permease	-
PRtIB026_RS10815 (PRtIB026_40670)	-	2380477..2381118 (-)	642	WP_203647558.1	DUF2062 domain-containing protein	-
PRtIB026_RS10820 (PRtIB026_40660)	comA	2381263..2383467 (+)	2205	WP_203647557.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PRtIB026_RS10825 (PRtIB026_40650)	exbB	2383656..2384291 (+)	636	WP_028690976.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PRtIB026_RS10830 (PRtIB026_40640)	-	2384288..2384722 (+)	435	WP_203647556.1	ExbD/TolR family protein	-
PRtIB026_RS10835 (PRtIB026_40630)	lpxK	2384722..2385726 (+)	1005	WP_203647555.1	tetraacyldisaccharide 4'-kinase	-
PRtIB026_RS10840 (PRtIB026_40620)	-	2385761..2385946 (+)	186	WP_011532874.1	Trm112 family protein	-
PRtIB026_RS10845 (PRtIB026_40610)	kdsB	2385943..2386707 (+)	765	WP_203647554.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PRtIB026_RS10850 (PRtIB026_40600)	-	2386707..2387171 (+)	465	WP_203647553.1	low molecular weight protein-tyrosine-phosphatase	-
PRtIB026_RS10855 (PRtIB026_40590)	murB	2387168..2388187 (+)	1020	WP_203647552.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 734 a.a.
• Molecular weight: 79503.20 Da
• Isoelectric Point: 10.6099

>NTDB_id=82514 PRtIB026_RS10820 WP_203647557.1 2381263..2383467(+) (comA) [Pseudomonas sp. RtIB026]
MRTGMLALVLGLLSLRFLPALPPVGWLIPLLLLALACLRTRAWPLGGFLLGVCWACWSAQQALDDRLPAALDGRTLWLEG
RVVGLPTRTERGVRFELEQPQSRRARLPQRVQLSWFDGPPLRAGEHWRLAVNLRRPLGLLNPHGPDQEATLLARRVGATG
TVKAGTRQGEEASSWRDGLRQRLLATDAHGREAALTALVLGDGAGLAREDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPRRLPWLPWACGLAMTAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAWVPLLMALSGVLLVEPL
SSLLPGFWLSFTAVAVLVLCFAARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPVSLSAPLANLLAVPWLSLGVLPLAL
LGTAMLPVPGLGEGMLWLAGLSLDGLFAVLTRLAGQQPAWIPEPLPLWAWLLVCLDAVLVLLPRGVPLRAPGAVMLLALW
APREQVPLGQVQVWQLDVGQGLAVLLRTRNHALLYDAGPARGGSDLGETVVLPALRKLGVKALDVMLISHGHADHAGGAA
AVRRGVPVARVLAGEVDGLEAASLCSSGERWQWDGVDFELWHWPQGASSNERSCVLRVQAMGERLLLAGDMEAGAERAWL
ATVEDPRVDWLQAPHHGSRTSSSEPFVQATAPRGVLISRGRHNGFGHPHGQVVERYRRHGVVVHDTAVEGALRLMLGSQG
EVEGVRRERRFWRD

Nucleotide

• Length: 2205 bp

>NTDB_id=82514 PRtIB026_RS10820 WP_203647557.1 2381263..2383467(+) (comA) [Pseudomonas sp. RtIB026]
ATGCGCACAGGGATGCTGGCGCTGGTCCTCGGGCTGTTGAGCCTGCGCTTCTTGCCTGCCTTGCCACCGGTCGGATGGCT
GATTCCACTGCTGTTGCTGGCCCTGGCCTGCCTGCGTACCCGGGCCTGGCCGCTGGGCGGGTTCCTGCTGGGTGTTTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTGGACGACCGCCTGCCGGCCGCGCTGGACGGCCGTACGCTGTGGCTGGAGGGG
CGGGTGGTGGGCCTGCCGACTCGCACCGAGCGCGGCGTGCGTTTCGAGTTGGAGCAGCCGCAGTCGCGCCGGGCCCGGTT
GCCGCAGCGGGTGCAATTGAGCTGGTTCGACGGGCCGCCGCTGCGGGCGGGGGAGCACTGGCGGCTGGCGGTCAACCTGC
GTCGGCCGCTGGGCCTGCTCAACCCGCATGGCCCGGATCAGGAGGCCACGCTGTTGGCACGGCGGGTCGGCGCCACCGGC
ACGGTCAAGGCCGGTACACGCCAGGGGGAGGAGGCCAGCAGTTGGCGCGACGGCCTGCGCCAGCGCTTGCTGGCCACCGA
TGCCCATGGCCGGGAGGCGGCGTTGACCGCCCTGGTGCTCGGGGATGGGGCAGGCCTGGCGCGGGAGGATTGGCAGGTGC
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGACAGCACATCGGCTTGCTGGCCGGATTGGTCTATGGGCTG
GTGGCAGGGTTGGCGCGTCTGGGGGCCTGGCCCCGGCGGTTGCCGTGGCTGCCCTGGGCCTGTGGCCTGGCGATGACGGC
GGCGCTGGGCTACGGCTGGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCGTGCCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCTTGCGTTTTCGTCACCTGGGCGCCTGGGTGCCGTTGCTGATGGCGCTGTCGGGCGTGCTGCTGGTCGAGCCGCTG
TCCAGCCTGTTGCCGGGGTTCTGGCTGTCGTTCACTGCCGTGGCGGTATTGGTGTTGTGCTTTGCCGCGCGGCTGGGCGC
CTGGCGGCCCTGGCAGGCCTGGACCCGCGCCCAGTGGGTGATCGCCGTGGGGCTGCTGCCGGTGCTGCTGGCCTTGGGGC
TGCCCGTCAGCCTCAGCGCGCCGCTGGCCAATCTGCTCGCCGTGCCATGGCTCAGCCTGGGCGTGCTGCCGTTGGCGTTG
CTGGGCACGGCCATGTTGCCGGTGCCTGGGCTGGGGGAGGGAATGCTGTGGCTGGCGGGCCTGTCGTTGGATGGATTGTT
TGCCGTGCTGACGCGATTGGCGGGCCAGCAGCCGGCCTGGATACCCGAGCCGCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGACGCCGTGCTGGTGCTGCTGCCCCGGGGCGTGCCATTGCGGGCACCGGGGGCGGTTATGTTGCTGGCGCTGTGG
GCGCCACGCGAACAGGTGCCCTTGGGCCAGGTGCAGGTCTGGCAGCTGGATGTGGGGCAGGGTCTGGCGGTGCTGCTGCG
TACCCGCAATCACGCGCTGCTGTATGACGCAGGCCCGGCCCGGGGTGGCAGTGACCTGGGCGAGACGGTGGTGCTGCCGG
CCTTGCGCAAGCTCGGGGTGAAGGCGCTGGATGTGATGCTGATCAGCCATGGCCATGCCGACCATGCCGGTGGGGCGGCG
GCGGTGCGGCGTGGGGTACCGGTGGCGCGGGTGCTGGCCGGCGAGGTCGACGGGCTGGAGGCGGCGTCGCTGTGCAGCAG
TGGTGAGCGTTGGCAGTGGGATGGCGTCGATTTCGAGCTTTGGCATTGGCCGCAGGGGGCTTCCAGCAACGAGCGTTCCT
GTGTGTTGCGGGTGCAGGCCATGGGCGAGCGCCTGCTGCTGGCCGGGGACATGGAGGCCGGGGCGGAGCGCGCCTGGCTG
GCCACGGTCGAGGATCCTCGGGTGGACTGGCTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCAGCGAGCCGTTCGT
CCAGGCCACGGCGCCGCGCGGGGTGCTGATTTCCCGAGGGCGACACAATGGCTTCGGGCATCCCCATGGGCAGGTGGTCG
AGCGCTATCGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGATTGATGCTGGGGAGTCAGGGT
GAGGTGGAGGGTGTGCGCAGGGAGCGGCGGTTCTGGCGTGATTAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-666)

• Domain of unknown function (DUF4131) (DUF4131) (20-166)

• Competence protein (Competence) (198-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.11	97.956	0.579
comA	Ralstonia pseudosolanacearum GMI1000	35.231	100	0.405