Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PRtIB026_RS10825 Genome accession   NZ_AP023348
Coordinates   2383656..2384291 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas sp. RtIB026     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378656..2389291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRtIB026_RS10805 (PRtIB026_40690) - 2378885..2379817 (+) 933 WP_203647560.1 ABC transporter ATP-binding protein -
  PRtIB026_RS10810 (PRtIB026_40680) - 2379814..2380593 (+) 780 WP_203647559.1 ABC transporter permease -
  PRtIB026_RS10815 (PRtIB026_40670) - 2380477..2381118 (-) 642 WP_203647558.1 DUF2062 domain-containing protein -
  PRtIB026_RS10820 (PRtIB026_40660) comA 2381263..2383467 (+) 2205 WP_203647557.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PRtIB026_RS10825 (PRtIB026_40650) exbB 2383656..2384291 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PRtIB026_RS10830 (PRtIB026_40640) - 2384288..2384722 (+) 435 WP_203647556.1 ExbD/TolR family protein -
  PRtIB026_RS10835 (PRtIB026_40630) lpxK 2384722..2385726 (+) 1005 WP_203647555.1 tetraacyldisaccharide 4'-kinase -
  PRtIB026_RS10840 (PRtIB026_40620) - 2385761..2385946 (+) 186 WP_011532874.1 Trm112 family protein -
  PRtIB026_RS10845 (PRtIB026_40610) kdsB 2385943..2386707 (+) 765 WP_203647554.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PRtIB026_RS10850 (PRtIB026_40600) - 2386707..2387171 (+) 465 WP_203647553.1 low molecular weight protein-tyrosine-phosphatase -
  PRtIB026_RS10855 (PRtIB026_40590) murB 2387168..2388187 (+) 1020 WP_203647552.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=82515 PRtIB026_RS10825 WP_028690976.1 2383656..2384291(+) (exbB) [Pseudomonas sp. RtIB026]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=82515 PRtIB026_RS10825 WP_028690976.1 2383656..2384291(+) (exbB) [Pseudomonas sp. RtIB026]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AACAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGTTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTTCTGGCCGGGGGTATCTCCAAGGCCCTGGTTACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment