NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	QJP89_RS16695	Genome accession	NZ_CP124334
Coordinates	3412231..3413355 (+)	Length	374 a.a.
NCBI ID	WP_000228517.1	Uniprot ID	E2QFE2
Organism	Escherichia coli strain AVS0786
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 3407231..3418355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP89_RS16670 (QJP89_16670)	mscL	3407348..3407761 (-)	414	WP_000022450.1	large-conductance mechanosensitive channel protein MscL	-
QJP89_RS16675 (QJP89_16675)	trkA	3407891..3409267 (-)	1377	WP_000691382.1	Trk system potassium transporter TrkA	-
QJP89_RS16680 (QJP89_16680)	rsmB	3409289..3410578 (-)	1290	WP_000744765.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
QJP89_RS16685 (QJP89_16685)	fmt	3410630..3411577 (-)	948	WP_000004421.1	methionyl-tRNA formyltransferase	-
QJP89_RS16690 (QJP89_16690)	def	3411592..3412101 (-)	510	WP_000114984.1	peptide deformylase	-
QJP89_RS16695 (QJP89_16695)	dprA	3412231..3413355 (+)	1125	WP_000228517.1	DNA-protecting protein DprA	Machinery gene
QJP89_RS16700 (QJP89_16700)	smg	3413327..3413800 (+)	474	WP_000460673.1	DUF494 family protein Smg	-
QJP89_RS16705 (QJP89_16705)	yrdD	3413829..3414371 (+)	543	WP_001296461.1	type I DNA topoisomerase	-
QJP89_RS16710 (QJP89_16710)	tsaC	3414376..3414948 (+)	573	WP_001296460.1	L-threonylcarbamoyladenylate synthase type 1 TsaC	-
QJP89_RS16715 (QJP89_16715)	aroE	3414953..3415771 (+)	819	WP_000451255.1	shikimate dehydrogenase	-
QJP89_RS16720 (QJP89_16720)	yrdB	3415768..3416025 (+)	258	WP_001070565.1	DUF1488 domain-containing protein	-
QJP89_RS16725 (QJP89_16725)	yrdA	3416001..3416555 (-)	555	WP_000005712.1	gamma carbonic anhydrase family protein	-

Sequence

Protein

Download Length: 374 a.a. Molecular weight: 40910.86 Da Isoelectric Point: 6.0395

                                >NTDB_id=825075 QJP89_RS16695 WP_000228517.1 3412231..3413355(+) (dprA) [Escherichia coli strain AVS0786]

MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE

FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN

GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA

LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE

VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide

Download Length: 1125 bp

                                >NTDB_id=825075 QJP89_RS16695 WP_000228517.1 3412231..3413355(+) (dprA) [Escherichia coli strain AVS0786]

ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG

GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT

CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA

TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC

ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG

CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT

GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT

TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA

TTATCAGTGGTCTAAGTAAGGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG

CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA

ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC

CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG

GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT

AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG

TTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	E2QFE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	48.78	98.663	0.481
dprA	Vibrio cholerae strain A1552	49.355	82.888	0.409
dprA	Glaesserella parasuis strain SC1401	44.807	90.107	0.404
dprA	Haemophilus influenzae Rd KW20	44.214	90.107	0.398
dprA	Legionella pneumophila strain ERS1305867	44.242	88.235	0.39

Detailed information NTG0825075