Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QJP81_RS02510 Genome accession   NZ_CP124320
Coordinates   519452..520576 (+) Length   374 a.a.
NCBI ID   WP_000228517.1    Uniprot ID   E2QFE2
Organism   Escherichia coli strain AVS0754     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 513873..530322 519452..520576 within 0


Gene organization within MGE regions


Location: 513873..530322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP81_RS02475 (QJP81_02475) zntR 513873..514298 (+) 426 WP_000285610.1 Zn(2+)-responsive transcriptional regulator -
  QJP81_RS02480 (QJP81_02480) arfA 514354..514572 (+) 219 WP_000092695.1 alternative ribosome-rescue factor ArfA -
  QJP81_RS02485 (QJP81_02485) mscL 514569..514982 (-) 414 WP_000022450.1 large-conductance mechanosensitive channel protein MscL -
  QJP81_RS02490 (QJP81_02490) trkA 515112..516488 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  QJP81_RS02495 (QJP81_02495) rsmB 516510..517799 (-) 1290 WP_000744765.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QJP81_RS02500 (QJP81_02500) fmt 517851..518798 (-) 948 WP_000004421.1 methionyl-tRNA formyltransferase -
  QJP81_RS02505 (QJP81_02505) def 518813..519322 (-) 510 WP_000114984.1 peptide deformylase -
  QJP81_RS02510 (QJP81_02510) dprA 519452..520576 (+) 1125 WP_000228517.1 DNA-protecting protein DprA Machinery gene
  QJP81_RS02515 (QJP81_02515) smg 520548..521021 (+) 474 WP_000460673.1 DUF494 family protein Smg -
  QJP81_RS02520 (QJP81_02520) yrdD 521050..521592 (+) 543 WP_001296461.1 type I DNA topoisomerase -
  QJP81_RS02525 (QJP81_02525) tsaC 521597..522169 (+) 573 WP_001296460.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  QJP81_RS02530 (QJP81_02530) aroE 522174..522992 (+) 819 WP_000451255.1 shikimate dehydrogenase -
  QJP81_RS02535 (QJP81_02535) yrdB 522989..523246 (+) 258 WP_001070565.1 DUF1488 domain-containing protein -
  QJP81_RS02540 (QJP81_02540) yrdA 523222..523776 (-) 555 WP_000005712.1 gamma carbonic anhydrase family protein -
  QJP81_RS02570 (QJP81_02570) yjaA 529432..529815 (+) 384 WP_001350411.1 YjaA family stress response protein -
  QJP81_RS02575 (QJP81_02575) yjaB 529879..530322 (-) 444 WP_000236963.1 acetyltransferase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40910.86 Da        Isoelectric Point: 6.0395

>NTDB_id=824926 QJP81_RS02510 WP_000228517.1 519452..520576(+) (dprA) [Escherichia coli strain AVS0754]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=824926 QJP81_RS02510 WP_000228517.1 519452..520576(+) (dprA) [Escherichia coli strain AVS0754]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT
TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAGGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E2QFE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

44.214

90.107

0.398
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39