Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | M2Y46_RS00735 | Genome accession | NZ_AP023347 |
| Coordinates | 153763..154899 (+) | Length | 378 a.a. |
| NCBI ID | WP_248415466.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR6 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 148763..159899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y46_RS00700 (JSHR6_01370) | panD | 149211..149567 (+) | 357 | WP_212793455.1 | aspartate 1-decarboxylase | - |
| M2Y46_RS00705 (JSHR6_01380) | - | 149570..149863 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| M2Y46_RS00710 (JSHR6_01390) | - | 149863..150858 (+) | 996 | WP_248415724.1 | PDZ domain-containing protein | - |
| M2Y46_RS00715 (JSHR6_01400) | comB6 | 150866..151921 (+) | 1056 | WP_180621765.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| M2Y46_RS00720 | comB7 | 151937..152062 (+) | 126 | WP_024117273.1 | hypothetical protein | Machinery gene |
| M2Y46_RS00725 (JSHR6_01410) | comB8 | 152059..152802 (+) | 744 | WP_096465473.1 | virB8 family protein | Machinery gene |
| M2Y46_RS00730 (JSHR6_01420) | comB9 | 152802..153770 (+) | 969 | WP_248415465.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| M2Y46_RS00735 (JSHR6_01430) | comB10 | 153763..154899 (+) | 1137 | WP_248415466.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| M2Y46_RS00740 (JSHR6_01440) | - | 154969..156381 (+) | 1413 | WP_248415467.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| M2Y46_RS00745 (JSHR6_01450) | gmd | 156395..157540 (+) | 1146 | WP_248415468.1 | GDP-mannose 4,6-dehydratase | - |
| M2Y46_RS00750 (JSHR6_01460) | - | 157533..158465 (+) | 933 | WP_248415469.1 | GDP-L-fucose synthase | - |
| M2Y46_RS00755 (JSHR6_01470) | hypE | 158715..159713 (-) | 999 | WP_212793461.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42069.68 Da Isoelectric Point: 9.9227
>NTDB_id=82489 M2Y46_RS00735 WP_248415466.1 153763..154899(+) (comB10) [Helicobacter pylori strain JSHR6]
MNKWIKGALIFVGGFATIATISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALIFVGGFATIATISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=82489 M2Y46_RS00735 WP_248415466.1 153763..154899(+) (comB10) [Helicobacter pylori strain JSHR6]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGAGGTTTTGCAACGATTGCAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAGATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATTGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGAGGTTTTGCAACGATTGCAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAGATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATTGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |