Detailed information NTG0082444

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: M2Y48_RS00730
• Genome accession: NZ_AP023344
• Coordinates: 153041..154006 (+)
• Length: 321 a.a.
• NCBI ID: WP_231216038.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain JSHR3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148041..159006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2Y48_RS00700 (JSHR3_01450)	panD	149449..149799 (+)	351	WP_154414081.1	aspartate 1-decarboxylase	-
M2Y48_RS00705 (JSHR3_01460)	-	149810..150103 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
M2Y48_RS00710 (JSHR3_01470)	-	150103..151098 (+)	996	WP_248420193.1	PDZ domain-containing protein	-
M2Y48_RS00715 (JSHR3_01480)	comB6	151106..152161 (+)	1056	WP_248420195.1	P-type conjugative transfer protein TrbL	Machinery gene
M2Y48_RS00720	comB7	152197..152301 (+)	105	WP_248419940.1	comB7 lipoprotein	Machinery gene
M2Y48_RS00725 (JSHR3_01490)	comB8	152298..153041 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
M2Y48_RS00730 (JSHR3_01500)	comB9	153041..154006 (+)	966	WP_231216038.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
M2Y48_RS00735 (JSHR3_01510)	comB10	153999..155135 (+)	1137	WP_001045734.1	DNA type IV secretion system protein ComB10	Machinery gene
M2Y48_RS00740 (JSHR3_01530)	-	155205..156618 (+)	1414	Protein_144	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
M2Y48_RS00745 (JSHR3_01540)	gmd	156632..157777 (+)	1146	WP_248419941.1	GDP-mannose 4,6-dehydratase	-
M2Y48_RS00750 (JSHR3_01550)	-	157770..158702 (+)	933	WP_212874764.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36901.45 Da
• Isoelectric Point: 9.4585

>NTDB_id=82444 M2Y48_RS00730 WP_231216038.1 153041..154006(+) (comB9) [Helicobacter pylori strain JSHR3]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=82444 M2Y48_RS00730 WP_231216038.1 153041..154006(+) (comB9) [Helicobacter pylori strain JSHR3]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTGAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.945	100	0.944