Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | M2Y48_RS00720 | Genome accession | NZ_AP023344 |
| Coordinates | 152197..152301 (+) | Length | 34 a.a. |
| NCBI ID | WP_248419940.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR3 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 147197..157301
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y48_RS00695 (JSHR3_01440) | - | 147237..149459 (+) | 2223 | WP_248419939.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| M2Y48_RS00700 (JSHR3_01450) | panD | 149449..149799 (+) | 351 | WP_154414081.1 | aspartate 1-decarboxylase | - |
| M2Y48_RS00705 (JSHR3_01460) | - | 149810..150103 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| M2Y48_RS00710 (JSHR3_01470) | - | 150103..151098 (+) | 996 | WP_248420193.1 | PDZ domain-containing protein | - |
| M2Y48_RS00715 (JSHR3_01480) | comB6 | 151106..152161 (+) | 1056 | WP_248420195.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| M2Y48_RS00720 | comB7 | 152197..152301 (+) | 105 | WP_248419940.1 | comB7 lipoprotein | Machinery gene |
| M2Y48_RS00725 (JSHR3_01490) | comB8 | 152298..153041 (+) | 744 | WP_000660524.1 | virB8 family protein | Machinery gene |
| M2Y48_RS00730 (JSHR3_01500) | comB9 | 153041..154006 (+) | 966 | WP_231216038.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| M2Y48_RS00735 (JSHR3_01510) | comB10 | 153999..155135 (+) | 1137 | WP_001045734.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| M2Y48_RS00740 (JSHR3_01530) | - | 155205..156618 (+) | 1414 | Protein_144 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 34 a.a. Molecular weight: 3925.66 Da Isoelectric Point: 8.5447
>NTDB_id=82442 M2Y48_RS00720 WP_248419940.1 152197..152301(+) (comB7) [Helicobacter pylori strain JSHR3]
MGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNFA
MGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNFA
Nucleotide
Download Length: 105 bp
>NTDB_id=82442 M2Y48_RS00720 WP_248419940.1 152197..152301(+) (comB7) [Helicobacter pylori strain JSHR3]
ATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTGCACATTGCATGAAAAGTTATA
TGAAAACAGGTTGAATTTTGCATGA
ATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTGCACATTGCATGAAAAGTTATA
TGAAAACAGGTTGAATTTTGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
82.353 |
100 |
0.824 |