Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R3F74_RS21100 Genome accession   NZ_CP138298
Coordinates   4337052..4337555 (+) Length   167 a.a.
NCBI ID   WP_039148277.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4332052..4342555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F74_RS21080 (R3F74_21080) - 4333032..4333790 (-) 759 WP_039148268.1 outer membrane protein -
  R3F74_RS21085 (R3F74_21085) - 4333933..4334685 (-) 753 WP_039148271.1 outer membrane protein -
  R3F74_RS21090 (R3F74_21090) - 4334909..4335598 (-) 690 WP_028153430.1 outer membrane protein -
  R3F74_RS21095 (R3F74_21095) - 4335833..4336600 (-) 768 WP_039148274.1 outer membrane protein -
  R3F74_RS21100 (R3F74_21100) ssb 4337052..4337555 (+) 504 WP_039148277.1 single-stranded DNA-binding protein Machinery gene
  R3F74_RS21105 (R3F74_21105) - 4337757..4338155 (+) 399 WP_039148280.1 DUF2306 domain-containing protein -
  R3F74_RS21110 (R3F74_21110) gyrA 4338324..4341068 (+) 2745 WP_039148283.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17651.57 Da        Isoelectric Point: 6.9877

>NTDB_id=824323 R3F74_RS21100 WP_039148277.1 4337052..4337555(+) (ssb) [Bradyrhizobium japonicum strain CNPSo 24]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGAEKYSTEVVLQGFNSTLTMLDGRGGGGGGGGGSFGDEPGGDFGSSGPVSSAPRRAVAAGGGGRNSD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=824323 R3F74_RS21100 WP_039148277.1 4337052..4337555(+) (ssb) [Bradyrhizobium japonicum strain CNPSo 24]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCCGAAATCCGCCGCACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCCACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAAT
GGCATCGCGTCGTGATCTTCAATGAAGGGCTCTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCGAAGGTTTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGCCGAGAAGTACTCCACCGAGGTCGTGCTCCAGGGCTT
CAACTCGACCCTGACGATGCTCGACGGCCGCGGCGGCGGCGGCGGCGGTGGAGGCGGCAGCTTCGGCGACGAGCCGGGCG
GCGATTTCGGCTCCTCCGGTCCCGTCAGCAGCGCACCGCGCCGTGCCGTTGCCGCCGGCGGCGGTGGCCGCAACAGCGAC
ATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.539
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.503
  ssb Neisseria meningitidis MC58

39.227

100

0.425
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.407