Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJR46_RS19110 Genome accession   NZ_CP124254
Coordinates   4172981..4173529 (-) Length   182 a.a.
NCBI ID   WP_005165221.1    Uniprot ID   A0A0E1NLP2
Organism   Yersinia enterocolitica strain Y140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4167981..4178529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR46_RS19090 (QJR46_19070) - 4168569..4169936 (-) 1368 WP_005165212.1 NCS2 family permease -
  QJR46_RS19095 (QJR46_19075) - 4170297..4170968 (-) 672 WP_013650521.1 glutathione S-transferase -
  QJR46_RS19100 (QJR46_19080) - 4171263..4171562 (+) 300 WP_020282668.1 helix-turn-helix transcriptional regulator -
  QJR46_RS19105 (QJR46_19085) - 4171564..4172892 (+) 1329 WP_020282667.1 type II toxin-antitoxin system HipA family toxin -
  QJR46_RS19110 (QJR46_19090) ssb 4172981..4173529 (-) 549 WP_005165221.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QJR46_RS19115 (QJR46_19095) uvrA 4174058..4176889 (+) 2832 WP_013650522.1 excinuclease ABC subunit UvrA -
  QJR46_RS19120 (QJR46_19100) - 4176948..4177301 (-) 354 WP_005165225.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19084.10 Da        Isoelectric Point: 4.9567

>NTDB_id=824312 QJR46_RS19110 WP_005165221.1 4172981..4173529(-) (ssb) [Yersinia enterocolitica strain Y140]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=824312 QJR46_RS19110 WP_005165221.1 4172981..4173529(-) (ssb) [Yersinia enterocolitica strain Y140]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1NLP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.913

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.729

100

0.588
  ssb Neisseria gonorrhoeae MS11

46.809

100

0.484
  ssb Neisseria meningitidis MC58

46.703

100

0.467