Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QCL65_RS22580 Genome accession   NZ_CP124218
Coordinates   4878815..4879342 (-) Length   175 a.a.
NCBI ID   WP_407312788.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4873815..4884342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS22555 (QCL65_22385) - 4874017..4875282 (+) 1266 WP_407312778.1 ABC transporter permease -
  QCL65_RS22560 (QCL65_22390) - 4875293..4875808 (+) 516 WP_407312780.1 DUF3299 domain-containing protein -
  QCL65_RS22565 (QCL65_22395) - 4875903..4876580 (+) 678 WP_407312782.1 OmpW/AlkL family protein -
  QCL65_RS22570 (QCL65_22400) - 4876684..4877610 (-) 927 WP_407312784.1 NAD-dependent epimerase/dehydratase family protein -
  QCL65_RS22575 (QCL65_22405) - 4877603..4878487 (-) 885 WP_407312786.1 sugar nucleotide-binding protein -
  QCL65_RS22580 (QCL65_22410) ssb 4878815..4879342 (-) 528 WP_407312788.1 single-stranded DNA-binding protein Machinery gene
  QCL65_RS22585 (QCL65_22415) - 4879352..4880746 (-) 1395 WP_407312790.1 MFS transporter -
  QCL65_RS22590 (QCL65_22420) uvrA 4880918..4883752 (+) 2835 WP_407312792.1 excinuclease ABC subunit UvrA -
  QCL65_RS22595 (QCL65_22425) bfr 4883827..4884291 (-) 465 WP_407312794.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19547.64 Da        Isoelectric Point: 5.9455

>NTDB_id=823958 QCL65_RS22580 WP_407312788.1 4878815..4879342(-) (ssb) [Pseudomonas sp. nanlin1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQSGGNNYQQSAPRQQAPRPQQSSPAPQQRESRPAPQQAAP
QPAQDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=823958 QCL65_RS22580 WP_407312788.1 4878815..4879342(-) (ssb) [Pseudomonas sp. nanlin1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACCTGTGGTCAGGACCCTGAAGTGCGTTACTTGCCTAACGGTAA
CGCCGTCACCAACCTGAGCCTGGCCACCAGCGAACAGTGGACCGACAAGCAGAGCGGGCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCAGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAAGTTTACATCGAA
GGCAAACTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGCTATACCACGGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAACAAGGCGACCAACAGTCGGGTGGCAACAACTACCAGCAGTCCGCGCCACGCC
AGCAGGCTCCGCGCCCACAACAGTCGTCCCCGGCGCCGCAGCAACGCGAGTCACGCCCAGCGCCACAACAGGCCGCACCG
CAGCCAGCGCAGGATTTCGATAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.983

100

0.583
  ssb Glaesserella parasuis strain SC1401

47.826

100

0.503
  ssb Neisseria meningitidis MC58

47.253

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491