Detailed information NTG0823956

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QCL65_RS21520
• Genome accession: NZ_CP124218
• Coordinates: 4658777..4660117 (+)
• Length: 446 a.a.
• NCBI ID: WP_407312389.1
• Uniprot ID: -
• Organism: Pseudomonas sp. nanlin1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4653777..4665117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCL65_RS21495 (QCL65_21325)	pgeF	4654010..4654738 (-)	729	WP_407316971.1	peptidoglycan editing factor PgeF	-
QCL65_RS21500 (QCL65_21330)	rluD	4654744..4655706 (-)	963	WP_407312381.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QCL65_RS21505 (QCL65_21335)	-	4655856..4656851 (+)	996	WP_407312383.1	outer membrane protein assembly factor BamD	-
QCL65_RS21510 (QCL65_21340)	-	4656956..4657192 (+)	237	WP_407312385.1	PP0621 family protein	-
QCL65_RS21515 (QCL65_21345)	pilS	4657182..4658780 (+)	1599	WP_407312387.1	sensor histidine kinase	Regulator
QCL65_RS21520 (QCL65_21350)	pilR	4658777..4660117 (+)	1341	WP_407312389.1	sigma-54-dependent transcriptional regulator	Regulator
QCL65_RS21525 (QCL65_21355)	thiO	4660216..4661331 (-)	1116	WP_407312391.1	glycine oxidase ThiO	-
QCL65_RS21530 (QCL65_21360)	-	4661346..4661744 (-)	399	WP_407312393.1	type IV pilin protein	-
QCL65_RS21535 (QCL65_21365)	-	4661753..4664827 (-)	3075	WP_407312395.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49591.03 Da
• Isoelectric Point: 6.6607

>NTDB_id=823956 QCL65_RS21520 WP_407312389.1 4658777..4660117(+) (pilR) [Pseudomonas sp. nanlin1]
MSPRQTILIVDDEPDIRELLEITLGRMKLDTRTARNVKEAQEWLAREPFDLCLTDMRLPDGTGMDLVQHIQLRHPQVPVA
MITAFGSVDTAIGALKAGAFDFLSKPVDLARLRELVSTALRLQTAGNGARTIDQQLLGESPPMLALRKQITRLARSQAPV
YISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKIGLFGTANGGTLFLDEVADL
PLPMQVKLLRAIQEKAIRAVGGQSEVVVDVRILCATHKDLAAEVTAGRFRQDLYYRLNVIELRVPALRERREDIVQLAAN
VLKRLAGGSGLPPARLSAQALETLKAYRFPGNVRELENMLERAYTLCENERIEAADLRLTEASGNTQEGEPNLAQIDNLE
DYLESVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=823956 QCL65_RS21520 WP_407312389.1 4658777..4660117(+) (pilR) [Pseudomonas sp. nanlin1]
ATGAGCCCACGGCAAACCATCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGAT
GAAACTCGACACGCGCACCGCGCGCAACGTCAAGGAAGCCCAGGAATGGCTGGCCCGCGAGCCGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGTACGGGCATGGACCTGGTGCAGCATATCCAGTTGCGTCACCCGCAAGTGCCGGTCGCC
ATGATCACCGCTTTCGGTAGCGTCGACACCGCCATTGGCGCGCTCAAGGCCGGTGCCTTCGATTTCCTCAGCAAGCCAGT
GGATCTGGCGCGTTTGCGCGAGCTGGTCAGCACTGCGTTGCGCTTACAAACCGCTGGCAACGGCGCGCGCACCATTGATC
AACAGTTGCTCGGCGAATCGCCGCCGATGCTGGCCCTGCGCAAACAAATCACGCGTCTGGCCCGTAGCCAGGCGCCGGTT
TATATCAGCGGCGAATCGGGCAGCGGTAAGGAACTGGTGGCCCGCTTGATCCACGAACAAGGGCCCCGTGCCGAGCGGCC
CTTCGTGCCGGTCAACTGTGGGGCTATTCCGTCAGAGCTGATGGAGAGCGAATTCTTTGGCCACCGCAAAGGCAGTTTTA
CCGGGGCGGTGGAAGACAAAATCGGCCTGTTCGGCACGGCCAATGGCGGCACACTGTTTCTCGATGAGGTGGCGGACCTG
CCCTTGCCCATGCAAGTGAAGCTGCTGCGCGCCATTCAGGAAAAAGCCATACGCGCCGTGGGCGGGCAAAGCGAAGTGGT
GGTGGACGTGCGCATTCTCTGCGCCACCCATAAAGACCTGGCCGCCGAAGTGACTGCCGGGCGCTTTCGCCAAGACCTGT
ATTACCGCCTCAACGTGATCGAGCTGCGCGTTCCGGCTTTGCGCGAGCGCCGCGAAGACATCGTGCAATTAGCCGCCAAC
GTGCTCAAGCGCCTGGCCGGGGGCAGCGGCCTGCCGCCTGCACGGCTGAGCGCCCAGGCCCTGGAAACCCTCAAGGCGTA
TCGCTTTCCGGGCAACGTGCGGGAACTGGAGAACATGCTCGAACGCGCCTACACCTTGTGCGAAAACGAGCGTATCGAGG
CCGCCGACCTGCGCCTCACCGAAGCGTCAGGCAACACCCAGGAAGGCGAACCGAACCTGGCGCAAATCGATAACCTGGAA
GACTACCTGGAGAGCGTCGAACGCAAGCTTATCCTCCAAGCCCTGGAAGAAACCCGCTGGAACCGTACGGCGGCGGCGCA
GCGCTTGAATTTGTCGTTTCGCTCCATGCGTTACCGGCTGAAGAAGCTGGGCCTAGACTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	81.49	99.327	0.809
pilR	Acinetobacter baumannii strain A118	48.156	100	0.498
luxO	Vibrio cholerae strain A1552	38.826	99.327	0.386