Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QCL65_RS21515 Genome accession   NZ_CP124218
Coordinates   4657182..4658780 (+) Length   532 a.a.
NCBI ID   WP_407312387.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4652182..4663780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS21495 (QCL65_21325) pgeF 4654010..4654738 (-) 729 WP_407316971.1 peptidoglycan editing factor PgeF -
  QCL65_RS21500 (QCL65_21330) rluD 4654744..4655706 (-) 963 WP_407312381.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QCL65_RS21505 (QCL65_21335) - 4655856..4656851 (+) 996 WP_407312383.1 outer membrane protein assembly factor BamD -
  QCL65_RS21510 (QCL65_21340) - 4656956..4657192 (+) 237 WP_407312385.1 PP0621 family protein -
  QCL65_RS21515 (QCL65_21345) pilS 4657182..4658780 (+) 1599 WP_407312387.1 sensor histidine kinase Regulator
  QCL65_RS21520 (QCL65_21350) pilR 4658777..4660117 (+) 1341 WP_407312389.1 sigma-54-dependent transcriptional regulator Regulator
  QCL65_RS21525 (QCL65_21355) thiO 4660216..4661331 (-) 1116 WP_407312391.1 glycine oxidase ThiO -
  QCL65_RS21530 (QCL65_21360) - 4661346..4661744 (-) 399 WP_407312393.1 type IV pilin protein -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 59128.04 Da        Isoelectric Point: 6.3713

>NTDB_id=823955 QCL65_RS21515 WP_407312387.1 4657182..4658780(+) (pilS) [Pseudomonas sp. nanlin1]
MHAEFPLQGNQQARRMLRLYHLYRLTIGITLVLLISADMDNRLLELADGDLFRLGSWLYLILNILVVVLLDRPRNPFQVF
GLTVVDIVLLAGLFYAGGGTPSGLGNLMVASVAISNLLLRARLGLLIAALATIGIIYLTFYLSYSRPQALNDYVQASTLG
VLCFAVSFMVQGLTRLLRTSESLAEQRASTVTNLEALNAQILQRMRTGILVLDAQLQVQLANQGALTLLGQEDITGQPIA
DYCGELLARLQQWQNNPALRLKSVKLSPAGPAVQVSFITLRNGENEQTLIFLEDLSQIAQQAQQLKLAALGRLTASIAHE
IRNPLGAISHAGQLLQESEDLPPADRRLTQIIQDHSKRMNLIIENVLQLSRRRQAEPEPLDLKHWLEQYVTEFRATAPAR
QQLHLYVTDGELETRMDPLQLGQVLNNLVQNGLRYSAQHNDHAQVWLNLFVEPTNGLPALEVLDDGPGFATDQLQHIFEP
FFTTEANGTGLGLYISRELCESNQAHLDYKPRENGGSCMRITFAHARKQSAT

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=823955 QCL65_RS21515 WP_407312387.1 4657182..4658780(+) (pilS) [Pseudomonas sp. nanlin1]
GTGCACGCTGAGTTTCCCCTGCAAGGCAACCAACAGGCGCGGCGCATGCTGCGCCTTTACCACCTGTATCGCCTGACCAT
CGGCATTACCCTGGTGCTGTTGATTTCCGCGGACATGGACAACCGCCTGCTGGAGCTGGCCGACGGCGATCTGTTCCGCC
TGGGCAGCTGGCTGTACCTGATTCTGAATATTCTCGTGGTGGTGTTGCTCGACCGCCCGCGCAACCCGTTCCAGGTGTTC
GGCCTGACCGTGGTCGATATCGTGCTGTTGGCCGGCCTTTTCTACGCCGGCGGCGGCACCCCCAGCGGCCTGGGCAACCT
GATGGTCGCTTCGGTGGCCATCAGCAACCTGTTGCTACGGGCGCGCCTGGGCTTGTTGATCGCCGCCCTGGCAACCATCG
GCATCATCTACCTGACGTTCTACCTGAGCTACAGCCGCCCCCAGGCGCTGAACGACTACGTGCAGGCCAGCACCCTGGGC
GTGTTGTGCTTCGCCGTGTCTTTCATGGTGCAGGGCCTGACCCGCCTGCTGCGCACCAGCGAATCCCTGGCCGAGCAACG
CGCCAGCACCGTGACCAACCTGGAGGCGTTGAACGCGCAGATTCTGCAGCGCATGCGCACGGGTATTCTGGTGCTCGACG
CCCAGCTCCAGGTGCAACTGGCCAACCAAGGCGCCCTCACGCTGCTGGGCCAAGAGGACATCACCGGGCAGCCGATCGCC
GACTACTGCGGCGAGCTGCTGGCGCGCCTGCAGCAGTGGCAGAACAACCCGGCCCTGCGCCTGAAAAGCGTCAAACTGAG
CCCAGCCGGCCCCGCCGTGCAGGTCAGTTTCATTACCTTGCGCAACGGTGAAAACGAACAGACGCTGATTTTCCTCGAGG
ACCTGTCGCAGATCGCCCAACAGGCCCAGCAATTGAAACTGGCCGCCCTGGGCCGCCTGACCGCCAGCATTGCCCATGAA
ATCCGCAACCCCTTGGGCGCTATCAGCCATGCGGGGCAACTGCTGCAAGAATCCGAAGACTTACCGCCGGCCGACCGCCG
CCTGACCCAGATCATCCAGGACCACAGCAAGCGGATGAACCTGATCATCGAGAACGTCTTGCAGTTGTCCCGCCGCCGCC
AGGCAGAACCCGAACCGCTGGACCTGAAACACTGGCTGGAGCAATACGTTACAGAGTTTCGCGCCACCGCCCCCGCGCGC
CAGCAATTGCACCTGTACGTCACGGATGGCGAACTGGAAACCCGCATGGACCCCCTACAGCTGGGCCAAGTGCTGAACAA
CCTGGTGCAAAACGGCCTGCGCTACAGCGCTCAGCACAATGACCACGCCCAGGTGTGGCTCAACTTATTCGTTGAACCGA
CCAACGGCTTACCTGCACTGGAAGTGCTGGATGACGGCCCCGGTTTTGCTACCGATCAATTGCAACATATCTTCGAACCC
TTCTTTACCACCGAGGCCAATGGCACAGGCCTTGGGCTGTATATTTCTCGCGAACTGTGCGAAAGCAACCAAGCCCACCT
AGACTACAAACCACGCGAGAACGGCGGCAGCTGCATGCGAATCACCTTCGCCCACGCACGCAAACAGAGCGCAACATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

99.624

0.598