Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QHG62_RS14945 Genome accession   NZ_CP123990
Coordinates   3070696..3071250 (+) Length   184 a.a.
NCBI ID   WP_281146425.1    Uniprot ID   -
Organism   Variovorax paradoxus strain MGMM5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3065696..3076250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG62_RS14935 (QHG62_14935) uvrA 3066107..3069187 (-) 3081 WP_281146423.1 excinuclease ABC subunit UvrA -
  QHG62_RS14940 (QHG62_14940) - 3069206..3070588 (-) 1383 WP_281146424.1 chloride channel protein -
  QHG62_RS14945 (QHG62_14945) ssb 3070696..3071250 (+) 555 WP_281146425.1 single-stranded DNA-binding protein Machinery gene
  QHG62_RS14950 (QHG62_14950) - 3071322..3071792 (-) 471 WP_281146426.1 hypothetical protein -
  QHG62_RS14955 (QHG62_14955) - 3071960..3072964 (-) 1005 WP_281146427.1 spore coat U domain-containing protein -
  QHG62_RS14960 (QHG62_14960) - 3072961..3075279 (-) 2319 WP_281146428.1 fimbria/pilus outer membrane usher protein -
  QHG62_RS14965 (QHG62_14965) - 3075320..3076048 (-) 729 WP_281146429.1 molecular chaperone -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19341.24 Da        Isoelectric Point: 5.9554

>NTDB_id=823620 QHG62_RS14945 WP_281146425.1 3070696..3071250(+) (ssb) [Variovorax paradoxus strain MGMM5]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGGGGGGGGYAPRAPAAAPRAP
AAAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=823620 QHG62_RS14945 WP_281146425.1 3070696..3071250(+) (ssb) [Variovorax paradoxus strain MGMM5]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCAACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTTTTCAACGGCCGCCTGGCCGAAATTGCCGGCCAATACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGT
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAAGGCCAGGGCGGCCCGTCGGGCGGCCCGGAGGACGATGGCGGCTATTCGCAGGGCGGCGGCGGTG
GCGGCTACTCGCAAGGTGGCGGTGGCGGCGGCGGCGGCGGTTATGCCCCCCGTGCGCCCGCCGCAGCACCGCGCGCTCCG
GCAGCGGCACCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.125

100

0.554
  ssb Vibrio cholerae strain A1552

46.875

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.448

99.457

0.462
  ssb Neisseria meningitidis MC58

45.355

99.457

0.451