Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QHG57_RS07215 Genome accession   NZ_CP123961
Coordinates   1636589..1637095 (-) Length   168 a.a.
NCBI ID   WP_330167719.1    Uniprot ID   -
Organism   Bartonella grahamii subsp. shimonis strain 02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1631589..1642095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG57_RS07195 - 1631919..1632431 (-) 513 WP_330167715.1 peptidylprolyl isomerase -
  QHG57_RS07200 - 1632450..1633043 (-) 594 WP_330167716.1 peptidylprolyl isomerase -
  QHG57_RS07205 coaD 1633033..1633552 (-) 520 Protein_1411 pantetheine-phosphate adenylyltransferase -
  QHG57_RS07210 gyrA 1633577..1636360 (-) 2784 WP_330167718.1 DNA gyrase subunit A -
  QHG57_RS07215 ssb 1636589..1637095 (-) 507 WP_330167719.1 single-stranded DNA-binding protein Machinery gene
  QHG57_RS07220 uvrA 1637428..1640343 (+) 2916 WP_330169020.1 excinuclease ABC subunit UvrA -
  QHG57_RS07225 - 1641409..1641747 (+) 339 WP_330167721.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18875.75 Da        Isoelectric Point: 6.7335

>NTDB_id=823280 QHG57_RS07215 WP_330167719.1 1636589..1637095(-) (ssb) [Bartonella grahamii subsp. shimonis strain 02]
MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRHTNERKERTEWHNIVIFNENLVKVAEQYLKKGSKIYI
EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRGAVGGEQGASQGGSYSGGFADSNSNQKNTFGQNNNQLGESFSH
KLDDDVPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=823280 QHG57_RS07215 WP_330167719.1 1636589..1637095(-) (ssb) [Bartonella grahamii subsp. shimonis strain 02]
ATGGCTGGTAGCCTTAATAAAGTTATTTTGATTGGTAATCTTGGTGCCGATCCTGAAATCCGCCGTTTGAATTCTGGTGA
TCAAGTGGCAAATCTGCGTATTGCTACTTCAGAAAGTTGGCGTGATCGGCATACAAATGAGCGAAAAGAACGTACTGAGT
GGCATAATATTGTTATTTTTAATGAAAACCTTGTCAAAGTTGCAGAGCAATATTTAAAAAAAGGCAGCAAAATTTATATT
GAGGGGCAGTTACAGACACGAAAATGGCAAGATCAAAATGGAAATGACCGTTATACAACAGAGATTGTTTTGCAAAAGTA
CCGTGGTGAATTACAAATGCTTGATGGGCGGGGAGCAGTGGGCGGGGAACAAGGTGCAAGTCAAGGGGGAAGTTATAGTG
GTGGCTTTGCCGATAGTAACTCAAATCAAAAAAATACTTTTGGTCAAAATAATAATCAATTGGGAGAAAGTTTTTCACAC
AAATTAGATGATGACGTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.554
  ssb Vibrio cholerae strain A1552

49.714

100

0.518
  ssb Neisseria meningitidis MC58

38.378

100

0.423
  ssb Neisseria gonorrhoeae MS11

38.378

100

0.423