Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QHG55_RS08575 Genome accession   NZ_CP123960
Coordinates   1902359..1902865 (-) Length   168 a.a.
NCBI ID   WP_330167719.1    Uniprot ID   -
Organism   Bartonella grahamii subsp. shimonis strain 01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1897359..1907865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG55_RS08555 - 1897689..1898201 (-) 513 WP_330167715.1 peptidylprolyl isomerase -
  QHG55_RS08560 - 1898220..1898813 (-) 594 WP_330167716.1 peptidylprolyl isomerase -
  QHG55_RS08565 coaD 1898803..1899322 (-) 520 Protein_1671 pantetheine-phosphate adenylyltransferase -
  QHG55_RS08570 gyrA 1899347..1902130 (-) 2784 WP_330167718.1 DNA gyrase subunit A -
  QHG55_RS08575 ssb 1902359..1902865 (-) 507 WP_330167719.1 single-stranded DNA-binding protein Machinery gene
  QHG55_RS08580 uvrA 1903198..1906113 (+) 2916 WP_330167720.1 excinuclease ABC subunit UvrA -
  QHG55_RS08585 - 1907179..1907517 (+) 339 WP_330167721.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18875.75 Da        Isoelectric Point: 6.7335

>NTDB_id=823274 QHG55_RS08575 WP_330167719.1 1902359..1902865(-) (ssb) [Bartonella grahamii subsp. shimonis strain 01]
MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRHTNERKERTEWHNIVIFNENLVKVAEQYLKKGSKIYI
EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRGAVGGEQGASQGGSYSGGFADSNSNQKNTFGQNNNQLGESFSH
KLDDDVPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=823274 QHG55_RS08575 WP_330167719.1 1902359..1902865(-) (ssb) [Bartonella grahamii subsp. shimonis strain 01]
ATGGCTGGTAGCCTTAATAAAGTTATTTTGATTGGTAATCTTGGTGCCGATCCTGAAATCCGCCGTTTGAATTCTGGTGA
TCAAGTGGCAAATCTGCGTATTGCTACTTCAGAAAGTTGGCGTGATCGGCATACAAATGAGCGAAAAGAACGTACTGAGT
GGCATAATATTGTTATTTTTAATGAAAACCTTGTCAAAGTTGCAGAGCAATATTTAAAAAAAGGCAGCAAAATTTATATT
GAGGGGCAGTTACAGACACGAAAATGGCAAGATCAAAATGGAAATGACCGTTATACAACAGAGATTGTTTTGCAAAAGTA
CCGTGGTGAATTACAAATGCTTGATGGGCGGGGAGCAGTGGGCGGGGAACAAGGTGCAAGTCAAGGGGGAAGTTATAGTG
GTGGCTTTGCCGATAGTAACTCAAATCAAAAAAATACTTTTGGTCAAAATAATAATCAATTGGGAGAAAGTTTTTCACAC
AAATTAGATGATGACGTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.554
  ssb Vibrio cholerae strain A1552

49.714

100

0.518
  ssb Neisseria meningitidis MC58

38.378

100

0.423
  ssb Neisseria gonorrhoeae MS11

38.378

100

0.423